RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 LRRC61Q9BV99 259 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TEX101Q9BY14 249 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 SLC25A22Q9H936 323 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 HSPB8Q9UJY1 196 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 NHSQ6T4R5 1651 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 AHDC1Q5TGY3 1603 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 HOXD4P09016 255 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 FAM87AP0C7U9 286 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 MMP11P24347 488 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PDZK1IP1Q13113 114 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 Q3ZCU0 254 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 LAMTOR1Q6IAA8 161 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 NRARPQ7Z6K4 114 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PTRH1Q86Y79 214 aaKnown RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 LSMEM1Q8N8F7 131 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 NUDT8Q8WV74 236 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM167BQ9NRX6 74 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PATJQ8NI35 1801 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 CCL21O00585 134 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 WNT9BO14905 357 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 FGF17O60258 216 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 KLF7O75840 302 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 DHRS3O75911 302 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PDGFAP04085 211 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 ARNTP27540 789 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 GALNT16Q8N428 558 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 CHRNA10Q9GZZ6 450 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PLA2G3Q9NZ20 509 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 A0A087WUJ7 227 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 CDRT15L2A8MXV6 281 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 HAX1O00165 279 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 CTDSP2O14595 271 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 SOX15O60248 233 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 ICMTO60725 284 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 GPX2P18283 190 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TNXAQ16473 311 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 MOGAT2Q3SYC2 334 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 ACER2Q5QJU3 275 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 MUC20Q8N307 709 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 EXTL1Q92935 676 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PIMREGQ9BSJ6 248 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PARP12Q9H0J9 701 aaKnown RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 CXorf51AA0A1B0GTR3 108 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 A0A1W2PS18 150 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 IGSF23A1L1A6 192 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 GPX5O75715 221 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 ADRB1P08588 477 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PF4V1P10720 104 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 RPS4Y1P22090 263 aaKnown RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 CA6P23280 308 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 GALR1P47211 349 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 HTRA4P83105 476 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 GUK1Q16774 197 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM128Q5BJH2 165 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PRSS45Q7RTY3 260 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 OR2W3Q7Z3T1 314 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TBC1D26Q86UD7 250 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 RTN4IP1Q8WWV3 396 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 NTNG2Q96CW9 530 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 OR10C1Q96KK4 312 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 LINC00052Q96N35 136 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 MAP1LC3CQ9BXW4 147 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TGIF2Q9GZN2 237 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 MFSD2BA6NFX1 497 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 PTBP3O95758 552 aaKnown RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 COMMD1Q8N668 190 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 AKR7LQ8NHP1 331 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TIMP4Q99727 224 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 MANBALQ9NQG1 85 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 ACER3Q9NUN7 267 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 GYPAP02724 150 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 ARG1P05089 322 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 ORM2P19652 201 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 SULT1A2P50226 295 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TAS2R60P59551 318 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 COL19A1Q14993 1142 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM183BQ1AE95 376 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM215Q68D42 235 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 ANKRD34AQ69YU3 496 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 SLC35E4Q6ICL7 350 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 RNASEKQ6P5S7 137 aaKnown RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF552Q9H707 407 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 RCL1Q9Y2P8 373 aaKnown RBP6.14□□□□□ -1.43
SCN1A-204ENST00000423058 SLC2A10O95528 541 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 SEMG1P04279 462 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 CEBPEQ15744 281 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 ZBTB37Q5TC79 503 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 CST9Q5W186 159 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 REC114Q7Z4M0 266 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF547Q8IVP9 402 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 FAM26EQ8N5C1 309 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM229BQ8NBD8 167 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 OR52I2Q8NH67 350 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 NIPSNAP1Q9BPW8 284 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 ZFP64Q9NPA5 681 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 MED29Q9NX70 200 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 PRRT4C9JH25 899 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 M0R3E3 92 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 WIPI1Q5MNZ9 446 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-204ENST00000423058 HCSTQ9UBK5 93 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms