RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ICE1Q9Y2F5 2266 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 FLNCQ14315 2725 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 A0A0G2JMP0 313 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 IGHV3-64DA0A0J9YX35 117 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 A0A0X1KG70 313 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 A0A1B0GWJ7 208 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 A0A1W2PP11 408 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 SYNGR1O43759 233 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 BCL3P20749 454 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 MPZP25189 248 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 VEGFCP49767 419 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 TAS2R20P59543 309 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 EFNB3Q15768 340 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 FAM76BQ5HYJ3 339 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 PRAMEF6Q5VXH4 476 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 TRIQKQ629K1 86 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 FIP1L1Q6UN15 594 aaKnown RBP14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 MUC15Q8N387 334 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 CELF2-AS1Q8N7Q2 184 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 OR4M2Q8NGB6 313 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 AQP3Q92482 292 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 OR2V2Q96R30 315 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 EGLN1Q9GZT9 426 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 FN3KRPQ9HA64 309 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 UFSP2Q9NUQ7 469 aa14.55□□□□□ -0.08
CCDC28B-202ENST00000421922 DOPEY1Q5JWR5 2465 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 TRAV18A0A075B6X5 111 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 IGKV1-12A0A0C4DH73 117 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 WIPF3A6NGB9 483 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 CDIPTO14735 213 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 GOSR1O95249 250 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 IGKV1D-12P01611 117 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 IGFBP2P18065 325 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 GABRR1P24046 479 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 LOXP28300 417 aaPredicted RBP14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 ZNF79Q15937 498 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 WDR86Q86TI4 376 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 BATF2Q8N1L9 274 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 Q8N402 240 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 ZFAND2BQ8WV99 257 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 EMG1Q92979 244 aaKnown RBP14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 MEGF10Q96KG7 1140 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 SRRQ9GZT4 340 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 LPAR5Q9H1C0 372 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 MS4A5Q9H3V2 200 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 RHOFQ9HBH0 211 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 PALMDQ9NP74 551 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 ABCB10Q9NRK6 738 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 DECR2Q9NUI1 292 aa14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 FBXO9Q9UK97 447 aaPredicted RBP14.54□□□□□ -0.08
CCDC28B-202ENST00000421922 ROS1P08922 2347 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 C17orf100A8MU93 164 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 TPPPO94811 219 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 NXPH2O95156 264 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 IGHV1-46P01743 117 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 SFTPBP07988 381 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 PRKACAP17612 351 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 TNFRSF1AP19438 455 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 MRPS10P82664 201 aaKnown RBP14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 MAB21L1Q13394 359 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 OR10R2Q8NGX6 335 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 ITLN1Q8WWA0 313 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 SOSTQ9BQB4 213 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 C1orf123Q9NWV4 160 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 IL19Q9UHD0 177 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 ST3GAL6Q9Y274 331 aa14.53□□□□□ -0.08
CCDC28B-202ENST00000421922 TEX15Q9BXT5 2789 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 A6NNC1 897 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 NPBWR2P48146 333 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 SNU13P55769 128 aaKnown RBP14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 FGF12P61328 243 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 DAZAP2Q15038 168 aaPredicted RBP14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 ARL6IP1Q15041 203 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 TESK1Q15569 626 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 ZNF181Q2M3W8 571 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 PCGF3Q3KNV8 242 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 RNASE12Q5GAN4 147 aaKnown RBP14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 AGAP6Q5VW22 663 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 ELP2Q6IA86 826 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 OR11L1Q8NGX0 322 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 RAB3CQ96E17 227 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 Q96M66 194 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 NUDT16L1Q9BRJ7 211 aaKnown RBP14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 NICN1Q9BSH3 213 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 TM2D1Q9BX74 207 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 TLNRD1Q9H1K6 362 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 RBFOX1Q9NWB1 397 aaKnown RBP14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 MTCH1Q9NZJ7 389 aa14.52□□□□□ -0.08
CCDC28B-202ENST00000421922 RELNP78509 3460 aa14.52□□□□□ -0.09
CCDC28B-202ENST00000421922 H3BUI4 141 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 HS3ST1O14792 307 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 RHBDL1O75783 438 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 UPK1BO75841 260 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 RNF224P0DH78 156 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 PGA5P0DJD9 388 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 IRF2P14316 349 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 BLVRBP30043 206 aaPredicted RBP14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 RBM11P57052 281 aaKnown RBP14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 GMFBP60983 142 aa14.51□□□□□ -0.09
CCDC28B-202ENST00000421922 FAM209AQ5JX71 171 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms