RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CCDC71LQ8N9Z2 235 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 OR2M3Q8NG83 312 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 OR4D5Q8NGN0 318 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 SECTM1Q8WVN6 248 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 NABP1Q96AH0 204 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 AKR1E2Q96JD6 320 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 CRB3Q9BUF7 120 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM231Q9H6L2 316 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 KIAA1456Q9P272 454 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 TINAGQ9UJW2 476 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 EML6Q6ZMW3 1958 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 RP1P56715 2156 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 CDC14CA4D256 554 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 C17orf51A8MQB3 221 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 METTL12A8MUP2 240 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF732B4DXR9 585 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 KCNAB3O43448 404 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 F10P00742 488 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 HOXB5P09067 269 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 PNLIPP16233 465 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 HOXA5P20719 270 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 CRYGSP22914 178 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 CHATP28329 748 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 HTR5AP47898 357 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 SULT1A1P50225 295 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 BAXQ07812 192 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 OR8G1Q15617 311 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 UBE2V2Q15819 145 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 MIDNQ504T8 468 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 OTPQ5XKR4 325 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 CFAP161Q6P656 301 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 RTN4RL2Q86UN3 420 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 THAP3Q8WTV1 239 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 IL22RA2Q969J5 263 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM56Q96MV1 263 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 BANF2Q9H503 90 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 OPA3Q9H6K4 179 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 OR2S2Q9NQN1 319 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 CD207Q9UJ71 328 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 MCTS1Q9ULC4 181 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 VDAC3Q9Y277 283 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM56-RWDD3S4R434 201 aa5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 NCOA6Q14686 2063 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-203ENST00000412148 TRANK1O15050 2925 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 IGHV1OR15-9A0A0B4J2B8 117 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 B9A039 149 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 NPIPA2E9PIF3 369 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 SMAD9O15198 467 aaKnown RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 ST8SIA3O43173 380 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 SGCEO43556 437 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 HSPB1P04792 205 aaKnown RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 OR5H8P0DN80 308 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 SLC25A6P12236 298 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 S100A10P60903 97 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 ENDOGQ14249 297 aaKnown RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 CNN3Q15417 329 aaKnown RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM176BQ3YBM2 270 aaPredicted RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF542PQ5EBM4 170 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 TRIM61Q5EBN2 209 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM211Q6ICI0 200 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 RNF144BQ7Z419 303 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM156Q8N614 296 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 WNT2BQ93097 391 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 MRPL24Q96A35 216 aaKnown RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 BOD1Q96IK1 185 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 GPER1Q99527 375 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 WDR77Q9BQA1 342 aaPredicted RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF2Q9BSG1 426 aaPredicted RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 NAA11Q9BSU3 229 aaPredicted RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 RPS10P5Q9NQ39 176 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 DHCR7Q9UBM7 475 aaKnown RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 ELOA3CA0A087WX78 387 aaPredicted RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF729A6NN14 1252 aaPredicted RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 MSTNO14793 375 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 BCAT2O15382 392 aaPredicted RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 HEXBP07686 556 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 SFTPBP07988 381 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 QDPRP09417 244 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF728P0DKX0 622 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 GLB1P16278 677 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 CDX1P47902 265 aaPredicted RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 MTCP1P56278 107 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 NXPH1P58417 271 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 MRPS34P82930 218 aaKnown RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 FABP9Q0Z7S8 132 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 RSPO1Q2MKA7 263 aaPredicted RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM27BQ5VT28 67 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM57BQ71RH2 274 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 C1QL2Q7Z5L3 287 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 SLC35E3Q7Z769 313 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM123Q8N131 208 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF283Q8N7M2 679 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 SLC22A8Q8TCC7 542 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 LMX1AQ8TE12 382 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 C2CD4CQ8TF44 421 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 GTF3AQ92664 365 aaKnown RBP5□□□□□ -1.61
CCDC88A-203ENST00000412148 ERGIC1Q969X5 290 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 MUCL1Q96DR8 90 aa5□□□□□ -1.61
CCDC88A-203ENST00000412148 RBMXL1Q96E39 390 aaKnown RBP5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms