RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 FAM173AQ9BQD7 235 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 ARGFXA6NJG6 315 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 CD37P11049 281 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 CCL2P13500 99 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 MRPS34P82930 218 aaKnown RBP16.29■□□□□ 0.2
USP48-204ENST00000400301 MSMO1Q15800 293 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 SLC36A1Q7Z2H8 476 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 ZNF573Q86YE8 665 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 ZFP82Q8N141 532 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 PPP1R35Q8TAP8 253 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 APOBEC3DQ96AK3 386 aaPredicted RBP16.29■□□□□ 0.2
USP48-204ENST00000400301 SF3B5Q9BWJ5 86 aaKnown RBP16.29■□□□□ 0.2
USP48-204ENST00000400301 TCFL5Q9UL49 500 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 FAM96BQ9Y3D0 163 aa16.29■□□□□ 0.2
USP48-204ENST00000400301 WDR1O75083 606 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 OR5AC1P0C628 307 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 GABRA4P48169 554 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 PIPOXQ9P0Z9 390 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 HELZP42694 1942 aaKnown RBP16.28■□□□□ 0.2
USP48-204ENST00000400301 A0A1W2PNV4 684 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 EFSO43281 561 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 OR1C1Q15619 314 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 C2orf68Q2NKX9 166 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 TSPO2Q5TGU0 170 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 ADPRHL1Q8NDY3 354 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 RASL12Q9NYN1 266 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 TLE4Q04727 773 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 DMWDQ09019 674 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 SPINK14Q6IE38 97 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 ZPBPQ9BS86 351 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 HDHD3Q9BSH5 251 aaPredicted RBP16.28■□□□□ 0.2
USP48-204ENST00000400301 FBXL17Q9UF56 701 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 DNAH12Q6ZR08 3092 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 HBE1P02100 147 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 SLC25A4P12235 298 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 SPATA46Q5T0L3 261 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 RBMXL1Q96E39 390 aaKnown RBP16.28■□□□□ 0.2
USP48-204ENST00000400301 MESP1Q9BRJ9 268 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 WDR13Q9H1Z4 485 aa16.28■□□□□ 0.2
USP48-204ENST00000400301 CNOT1A5YKK6 2376 aaKnown RBP16.28■□□□□ 0.2
USP48-204ENST00000400301 CEBPZOSA8MTT3 80 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 SIRPB1O00241 398 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 GEMIN2O14893 280 aaKnown RBP16.27■□□□□ 0.2
USP48-204ENST00000400301 TIMM8AO60220 97 aaPredicted RBP16.27■□□□□ 0.2
USP48-204ENST00000400301 CLDN1O95832 211 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 HPNP05981 417 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 S100PP25815 95 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 CCL11P51671 97 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 STARD6P59095 220 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 FLI1Q01543 452 aaPredicted RBP16.27■□□□□ 0.2
USP48-204ENST00000400301 SURF2Q15527 256 aaPredicted RBP16.27■□□□□ 0.2
USP48-204ENST00000400301 RPUSD3Q6P087 351 aaKnown RBP16.27■□□□□ 0.2
USP48-204ENST00000400301 HOGA1Q86XE5 327 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 TCTEX1D2Q8WW35 142 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 NAA60Q9H7X0 242 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 PLEKHF2Q9H8W4 249 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 RCL1Q9Y2P8 373 aaKnown RBP16.27■□□□□ 0.2
USP48-204ENST00000400301 CTSDP07339 412 aaPredicted RBP16.27■□□□□ 0.2
USP48-204ENST00000400301 H2AFB1P0C5Y9 115 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 ZNF345Q14585 488 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 SSPNQ14714 243 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 NHLRC3Q5JS37 347 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 C2CD4CQ8TF44 421 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 PIK3IP1Q96FE7 263 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 TECTBQ96PL2 329 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 RTL8AQ9BWD3 113 aa16.27■□□□□ 0.2
USP48-204ENST00000400301 HEATR5AQ86XA9 2040 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 CEP350Q5VT06 3117 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 NPIPB13A6NJU9 1138 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 NPIPB4C9JG80 1138 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 RNASEK-C17orf49H0YIS7 233 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 RAMP1O60894 148 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 NPIPB7O75200 414 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 AADACP22760 399 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 HBG1P69891 147 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 HBG2P69892 147 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 CATR1Q13166 79 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 IL34Q6ZMJ4 242 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 ABHD3Q8WU67 409 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 OR5B12Q96R08 314 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 MMP26Q9NRE1 261 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 PCNTO95613 3336 aa16.27■□□□□ 0.19
USP48-204ENST00000400301 RAB19A4D1S5 217 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 RNF212BA8MTL3 300 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 PMS2CLQ68D20 193 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 LFNGQ8NES3 379 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 SHARPINQ9H0F6 387 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 AKIRIN1Q9H9L7 192 aaPredicted RBP16.26■□□□□ 0.19
USP48-204ENST00000400301 DENND4CQ5VZ89 1909 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 ASCL1P50553 236 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 VAX1Q5SQQ9 334 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 ADAM5Q6NVV9 412 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 AK3Q9UIJ7 227 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 H7C1Q1 480 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 TNFSF15O95150 251 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 FHL1Q13642 323 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 SAP25Q8TEE9 199 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 C10orf35Q96D05 121 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 SPTA1P02549 2419 aa16.26■□□□□ 0.19
USP48-204ENST00000400301 LINC01387J3KSC0 135 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms