RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 C4orf26Q17RF5 130 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 DEFB115Q30KQ5 88 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF718Q3SXZ3 478 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ELP2Q6IA86 826 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 CNIH2Q6PI25 160 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 LRRTM1Q86UE6 522 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 CLDN22Q8N7P3 220 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR4K17Q8NGC6 315 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR52E2Q8NGJ4 325 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR51G1Q8NGK1 321 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 YIPF5Q969M3 257 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 MARC2Q969Z3 335 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TAMM41Q96BW9 452 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 FGGYQ96C11 551 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 C12orf43Q96C57 262 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 SMIM12Q96EX1 92 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 PGLYRP4Q96LB8 373 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 PPP1R2P1Q96PQ5 205 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM208Q9BTX3 173 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 KCNJ16Q9NPI9 418 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM9BQ9NQ34 198 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 DDIT4Q9NX09 232 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ST3GAL6Q9Y274 331 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TP53TG1Q9Y2A0 90 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR51B4Q9Y5P0 310 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 PHLPP1O60346 1717 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 UBR1Q8IWV7 1749 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 SETD5Q9C0A6 1442 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 CEP350Q5VT06 3117 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 MAST1Q9Y2H9 1570 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 IGHV2OR16-5A0A0B4J2B6 119 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 A0A0G2JRQ6 117 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 A0A1B0GV90 55 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 FOXI3A8MTJ6 420 aaPredicted RBP3.23□□□□□ -1.89
HMGB1-204ENST00000399489 OR11H12B2RN74 326 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 SLC17A2O00624 439 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 BHLHE40O14503 412 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 ENTPD6O75354 484 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 AIFM1O95831 613 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 CLDN1O95832 211 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 PPICP45877 212 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 RND2P52198 227 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 DLX1P56177 255 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 SRPXP78539 464 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 DEFA6Q01524 100 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 NRF1Q16656 503 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 C17orf58Q2M2W7 97 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 TFDP3Q5H9I0 405 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 Q6ZRP5 223 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 FOXL2NBQ6ZUU3 175 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 FAM220AQ7Z4H9 259 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 PPP1R27Q86WC6 154 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 RAB43Q86YS6 212 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 GAPTQ8N292 157 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 STPG4Q8N801 248 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 OR11H1Q8NG94 326 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 OR11H2Q8NH07 326 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 STOML3Q8TAV4 291 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 SSC4DQ8WTU2 575 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 TMBIM1Q969X1 311 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 C18orf12Q96KH6 178 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 KIR2DL4Q99706 377 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 COA1Q9GZY4 146 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 C20orf85Q9H1P6 137 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 ARV1Q9H2C2 271 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 B3GAT2Q9NPZ5 323 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 CALYQ9NYX4 217 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 V9GY05 133 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 SHPRHQ149N8 1683 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 ARHGAP31Q2M1Z3 1444 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 BCL9LQ86UU0 1499 aa3.23□□□□□ -1.89
HMGB1-204ENST00000399489 LRP5O75197 1615 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 KIAA1210Q9ULL0 1709 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 IGKV1D-13A0A0B4J2D9 117 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 CEACAM18A8MTB9 384 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 PRAC2D3DTV9 90 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 H7C1H1 209 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 KCNK1O00180 336 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 CDX4O14627 284 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 HCRTR1O43613 425 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 ZG16O60844 167 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 DCTN3O75935 186 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SLC22A5O76082 557 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TTC4O95801 387 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 CYB5R3P00387 301 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 IGKV1-13P0DP09 117 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 AK4P27144 223 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 ADORA1P30542 326 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 PFN2P35080 140 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 RCVRNP35243 200 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SPRP35270 261 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 IFNGR2P38484 337 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 CEACAM6P40199 344 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 PMELP40967 661 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 KIR2DS2P43631 304 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SNAP25P60880 206 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 NUTF2P61970 127 aaKnown RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 BTN3A2P78410 334 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SKP2Q13309 424 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 APOFQ13790 326 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms