RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 MAJINQ3KP22 176 aa12.89□□□□□ -0.35
VPS9D1-201ENST00000389386 RNF144BQ7Z419 303 aa12.89□□□□□ -0.35
VPS9D1-201ENST00000389386 SLC35G3Q8N808 338 aa12.89□□□□□ -0.35
VPS9D1-201ENST00000389386 DNASE2BQ8WZ79 361 aa12.89□□□□□ -0.35
VPS9D1-201ENST00000389386 ZNF524Q96C55 264 aa12.89□□□□□ -0.35
VPS9D1-201ENST00000389386 SPACA7Q96KW9 195 aa12.89□□□□□ -0.35
VPS9D1-201ENST00000389386 VSTM2LQ96N03 204 aa12.89□□□□□ -0.35
VPS9D1-201ENST00000389386 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.89□□□□□ -0.35
VPS9D1-201ENST00000389386 TRBV24-1A0A075B6N3 115 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 XRCC2O43543 280 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 BGLAPP02818 100 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 CELA2BP08218 269 aaPredicted RBP12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 FOLR1P15328 257 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 FOSL2P15408 326 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 ERVFC1-1P60608 527 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 FOXF1Q12946 379 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 COA6Q5JTJ3 125 aaKnown RBP12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 ZNF506Q5JVG8 444 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 GATSQ8NAP1 163 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 ADAT3Q96EY9 351 aaPredicted RBP12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 THOC3Q96J01 351 aaKnown RBP12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 TMEM242Q9NWH2 141 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 IL17BQ9UHF5 180 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 FREM3P0C091 2139 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 TCRBV21S2A2A0A5A6 115 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 A6NIZ1 184 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 MPIG6BO95866 241 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 CTLA4P16410 223 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 ZNF10P21506 573 aaPredicted RBP12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 MDKP21741 143 aaPredicted RBP12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 RAP1BP61224 184 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 CSNK2A1P68400 391 aaPredicted RBP12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 CLN3Q13286 438 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 NNATQ16517 81 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 GALNTL5Q7Z4T8 443 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 ZNF440Q8IYI8 595 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 CSNK2A3Q8NEV1 391 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 ARHGAP5-AS1Q96IT6 56 aa12.88□□□□□ -0.35
VPS9D1-201ENST00000389386 C11orf98E9PRG8 122 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 CLDN34H7C241 214 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 HRKO00198 91 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 MPZL1O95297 269 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 SNU13P55769 128 aaKnown RBP12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 TAS2R46P59540 309 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 PPP1CAP62136 330 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 PAX5Q02548 391 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 TEX38Q6PEX7 206 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 PHF7Q9BWX1 381 aaPredicted RBP12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 STARD5Q9NSY2 213 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 SPACA6W5XKT8 324 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 DIRAS3O95661 229 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 SLC35E2P0CK97 266 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 ARFRP1Q13795 201 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 NFATC4Q14934 902 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 OR2G3Q8NGZ4 309 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 HLA-CQ95604 372 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 DNAJA3Q96EY1 480 aa12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 C1orf147Q96MC9 270 aaPredicted RBP12.87□□□□□ -0.35
VPS9D1-201ENST00000389386 METTL12A8MUP2 240 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 ZNF93P35789 620 aaPredicted RBP12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 COL10A1Q03692 680 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 C1orf61Q13536 156 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 GLIPR1L1Q6UWM5 242 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 Q6ZS52 159 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 ZFP62Q8NB50 900 aaPredicted RBP12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 NOXO1Q8NFA2 376 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 NPRL2Q8WTW4 380 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 BANF2Q9H503 90 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 KIR3DX1Q9H7L2 352 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 ASCL3Q9NQ33 180 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 VAX2Q9UIW0 290 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 SEC16AO15027 2179 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 NSG1A0A0A6YYJ2 146 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 CDC14BO60729 498 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 EPHA1P21709 976 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 BCKDHBP21953 392 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 MSX1P28360 303 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 CCR4P51679 360 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 FOXK1P85037 733 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 HSF1Q00613 529 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 HERPUD1Q15011 391 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 ACKR1Q16570 336 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 DEFB123Q8N688 67 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 ZNF248Q8NDW4 579 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 ZNF519Q8TB69 540 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 SCARF2Q96GP6 870 aaPredicted RBP12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 SPACA5Q96QH8 159 aa12.86□□□□□ -0.35
VPS9D1-201ENST00000389386 CACNA1IQ9P0X4 2223 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 TMEM265A0A087WTH1 108 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 A0A1B0GU03 582 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 CRYM-AS1A6NIL9 109 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 SHISA7A6NL88 538 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 TMEM210A6NLX4 147 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 A6NNC1 897 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 CRTAPO75718 401 aaPredicted RBP12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 CBLN3Q6UW01 205 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 Q6ZSR6 202 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 SLC25A26Q70HW3 274 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 ARHGEF39Q8N4T4 335 aa12.85□□□□□ -0.35
VPS9D1-201ENST00000389386 BCORP1Q8N888 145 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms