RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CCL2P13500 99 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 CPT2P23786 658 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF273Q14593 569 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 PDZD9Q8IXQ8 264 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 MRPS24Q96EL2 167 aaKnown RBP11.59□□□□□ -0.55
CCDC3-202ENST00000378839 C12orf57Q99622 126 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 ADAT1Q9BUB4 502 aaKnown RBP11.59□□□□□ -0.55
CCDC3-202ENST00000378839 FGF23Q9GZV9 251 aaPredicted RBP11.59□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF703Q9H7S9 590 aaPredicted RBP11.59□□□□□ -0.55
CCDC3-202ENST00000378839 PLEKHJ1Q9NW61 149 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 TIMM10BQ9Y5J6 103 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 FAM221AA4D161 298 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 SERPINE3A8MV23 424 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 OPRM1P35372 400 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 CBX5P45973 191 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 OR3A2P47893 321 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 CLDN18P56856 261 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 TAS2R31P59538 309 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 UBA52P62987 128 aaKnown RBP11.59□□□□□ -0.55
CCDC3-202ENST00000378839 SHEQ5VZ18 495 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 ELP2Q6IA86 826 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 MOB3CQ70IA8 216 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 C5orf24Q7Z6I8 188 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 LINC00518Q8N0U6 118 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 OR51F2Q8NH61 342 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF471Q9BX82 626 aaPredicted RBP11.59□□□□□ -0.55
CCDC3-202ENST00000378839 NMES1Q9C002 83 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 CYTL1Q9NRR1 136 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 SLC7A10Q9NS82 523 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 MRPS18CQ9Y3D5 142 aaKnown RBP11.59□□□□□ -0.55
CCDC3-202ENST00000378839 SESN1Q9Y6P5 492 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 A0A096LPE4 126 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 TRBV6-7A0A0A0MS04 114 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 A0A1W2PPZ6 126 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 FAM166BA8MTA8 275 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 SERPINA5P05154 406 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 JMJD7P0C870 316 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 RD3LP0DJH9 198 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 IL15RAQ13261 267 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF528Q3MIS6 628 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 PABPC1L2AQ5JQF8 200 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 ASCL4Q6XD76 172 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 CALHM1Q8IU99 346 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 S100A13Q99584 98 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 PCDHB16Q9NRJ7 776 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 IL17BQ9UHF5 180 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 LHX6Q9UPM6 363 aa11.59□□□□□ -0.55
CCDC3-202ENST00000378839 MED13Q9UHV7 2174 aa11.58□□□□□ -0.55
CCDC3-202ENST00000378839 KANTRA0A1W2PQU2 76 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 ATG12O94817 140 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 KNG1P01042 644 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 APOC1P02654 83 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 MAGEA5P43359 124 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 SCRN3Q0VDG4 424 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 C3AR1Q16581 482 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 CHRFAM7AQ494W8 412 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 PXT1Q8NFP0 134 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 THAP6Q8TBB0 222 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 HS3ST6Q96QI5 342 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 CDC6Q99741 560 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF2Q9BSG1 426 aaPredicted RBP11.58□□□□□ -0.56
CCDC3-202ENST00000378839 DDA1Q9BW61 102 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 PRRG4Q9BZD6 226 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 SLC6A15Q9H2J7 730 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 NRASP01111 189 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF883P0CG24 379 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 RIPPLY2Q5TAB7 128 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 TUSC5Q8IXB3 177 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 OR10AD1Q8NGE0 317 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 DCUN1D4Q92564 292 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 SPSB1Q96BD6 273 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 SHARPINQ9H0F6 387 aa11.58□□□□□ -0.56
CCDC3-202ENST00000378839 CHATP28329 748 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 TAS2R46P59540 309 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 RSU1Q15404 277 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 LINC00696Q6ZRV3 163 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 TMEM200AQ86VY9 491 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 ADAMTS17Q8TE56 1095 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 CPNE4Q96A23 557 aaPredicted RBP11.57□□□□□ -0.56
CCDC3-202ENST00000378839 FAM117AQ9C073 453 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 METTL9Q9H1A3 318 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 SLC25A32Q9H2D1 315 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 CBR1P16152 277 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 OR8B8Q15620 311 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 POC1AQ8NBT0 407 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 RAB18Q9NP72 206 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 C3orf80F5H4A9 247 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 SPINK2P20155 84 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 NPBWR2P48146 333 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 RBP2P50120 134 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 ARF1P84077 181 aaKnown RBP11.57□□□□□ -0.56
CCDC3-202ENST00000378839 SPEM2Q0P670 501 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 PLA2G2CQ5R387 149 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 HSD17B13Q7Z5P4 300 aaPredicted RBP11.57□□□□□ -0.56
CCDC3-202ENST00000378839 FBXL14Q8N1E6 418 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 PIK3IP1Q96FE7 263 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 STRADBQ9C0K7 418 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 ACKR4Q9NPB9 350 aa11.57□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF629Q9UEG4 869 aaPredicted RBP11.57□□□□□ -0.56
CCDC3-202ENST00000378839 PFDN2Q9UHV9 154 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms