RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ZNF879B4DU55 563 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 MRPS14O60783 128 aaKnown RBP12.37□□□□□ -0.43
COL9A1-204ENST00000370496 RPS11P62280 158 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL9A1-204ENST00000370496 IKZF1Q13422 519 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 DCAF12L2Q5VW00 463 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 ACP7Q6ZNF0 438 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 MKXQ8IYA7 352 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 FAM216BQ8N7L0 139 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 OR51A2Q8NGJ7 313 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 DERL3Q96Q80 235 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 CCL13Q99616 98 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 MGLLQ99685 303 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 FAM192AQ9GZU8 254 aa12.37□□□□□ -0.43
COL9A1-204ENST00000370496 A0A1W2PPK0 400 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 TRAPPC2LH3BP13 241 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 SPRY1O43609 319 aaPredicted RBP12.36□□□□□ -0.43
COL9A1-204ENST00000370496 NOS1APO75052 506 aaPredicted RBP12.36□□□□□ -0.43
COL9A1-204ENST00000370496 ALX3O95076 343 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 FSTP19883 344 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 ZFP36P26651 326 aaKnown RBP12.36□□□□□ -0.43
COL9A1-204ENST00000370496 GABRA2P47869 451 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 NPY4RP50391 375 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 KISS1Q15726 138 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 CR1LQ2VPA4 569 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 DDI2Q5TDH0 399 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 ASPHD2Q6ICH7 369 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 FIP1L1Q6UN15 594 aaKnown RBP12.36□□□□□ -0.43
COL9A1-204ENST00000370496 SATL1Q86VE3 508 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 Q8IYB0 196 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 MS4A15Q8N5U1 240 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 ST8SIA4Q92187 359 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 EMG1Q92979 244 aaKnown RBP12.36□□□□□ -0.43
COL9A1-204ENST00000370496 ORAI1Q96D31 301 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 DNTTIP1Q9H147 329 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 SMURF1Q9HCE7 757 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 ISYNA1Q9NPH2 558 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 ACOT13Q9NPJ3 140 aa12.36□□□□□ -0.43
COL9A1-204ENST00000370496 TRBV5-7A0A0A0MS05 114 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 A0A1B0GW55 424 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 KIAA1324LA8MWY0 1029 aaPredicted RBP12.35□□□□□ -0.43
COL9A1-204ENST00000370496 DVL1O14640 695 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 NDUFB3O43676 98 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 TFF1P04155 84 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 DUX4L2P0CJ85 424 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 DUX4L3P0CJ86 424 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 DUX4L4P0CJ87 422 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 DUX4L5P0CJ88 424 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 DUX4L6P0CJ89 424 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 DUX4L7P0CJ90 424 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 BDKRB2P30411 391 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 IL13RA1P78552 427 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 PDZK1IP1Q13113 114 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 GPR50Q13585 617 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 KCTD21Q4G0X4 260 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 WDR25Q64LD2 544 aaPredicted RBP12.35□□□□□ -0.43
COL9A1-204ENST00000370496 ZNF529Q6P280 563 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 FAHD2BQ6P2I3 314 aaPredicted RBP12.35□□□□□ -0.43
COL9A1-204ENST00000370496 DUX4L9Q6RFH8 374 aaPredicted RBP12.35□□□□□ -0.43
COL9A1-204ENST00000370496 ANGPTL6Q8NI99 470 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 FAHD2AQ96GK7 314 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 SHARPINQ9H0F6 387 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 TMEM138Q9NPI0 162 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 TMEM160Q9NX00 188 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 MTCH1Q9NZJ7 389 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 KAAG1Q9UBP8 84 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 DUX4Q9UBX2 424 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 LPAR3Q9UBY5 353 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 OR14J1Q9UGF5 321 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 CDC42EP3Q9UKI2 254 aa12.35□□□□□ -0.43
COL9A1-204ENST00000370496 IGKV1D-17A0A075B6S4 117 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 ANGPTL7O43827 346 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 ACAA1P09110 424 aaPredicted RBP12.34□□□□□ -0.43
COL9A1-204ENST00000370496 TMEM225BP0DP42 221 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 PSG2P11465 335 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 CPEP16870 476 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 BCL3P20749 454 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 GATA3P23771 443 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 PSMA1P25786 263 aaKnown RBP12.34□□□□□ -0.43
COL9A1-204ENST00000370496 ERVK11-1P61568 191 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 EMX1Q04741 257 aaPredicted RBP12.34□□□□□ -0.43
COL9A1-204ENST00000370496 TPBGQ13641 420 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 LRRC10Q5BKY1 277 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 FAM120AOSQ5T036 256 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 ZNF773Q6PK81 442 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 BTNL3Q6UXE8 466 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 IL17RELQ6ZVW7 336 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 PNLDC1Q8NA58 520 aaKnown RBP12.34□□□□□ -0.43
COL9A1-204ENST00000370496 TMEM185AQ8NFB2 350 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 OR52N4Q8NGI2 321 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 TNFAIP8L1Q8WVP5 186 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 FCGR1BQ92637 280 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 TMEM203Q969S6 136 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 GAFA1Q96PS6 74 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 HES4Q9HCC6 221 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 NOX4Q9NPH5 578 aa12.34□□□□□ -0.43
COL9A1-204ENST00000370496 RBFOX1Q9NWB1 397 aaKnown RBP12.34□□□□□ -0.43
COL9A1-204ENST00000370496 SONP18583 2426 aaKnown RBP12.34□□□□□ -0.43
COL9A1-204ENST00000370496 TRAV8-7A0A075B6U6 113 aa12.33□□□□□ -0.44
COL9A1-204ENST00000370496 LOC105371242A0A075B767 164 aa12.33□□□□□ -0.44
COL9A1-204ENST00000370496 PPIAL4CA0A0B4J2A2 164 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms