RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RRADP55042 308 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 CLDN18P56856 261 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 NRN1LQ496H8 165 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 C1QTNF5Q9BXJ0 243 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 METTL8Q9H825 291 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 SLC7A10Q9NS82 523 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 C14orf166Q9Y224 244 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 AHCTF1Q8WYP5 2266 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 CDK2AP1O14519 115 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 FUT6P51993 359 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 BHLHE23Q8NDY6 225 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 SULT4A1Q9BR01 284 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 B4GALT7Q9UBV7 327 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 GPR179Q6PRD1 2367 aa18.05■□□□□ 0.48
CCDC88B-203ENST00000359902 PTGER4P35408 488 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 ARF1P84077 181 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 PDZK1IP1Q13113 114 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 OR1C1Q15619 314 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 PIGYQ3MUY2 71 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 PAN3Q58A45 887 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 DCAF10Q5QP82 559 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 TMEM164Q5U3C3 297 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 UNQ6126/PRO20091Q6UXV3 157 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 PIGCQ92535 297 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 SPSB4Q96A44 273 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 PIK3IP1Q96FE7 263 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 CMSS1Q9BQ75 279 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 LINC00470Q9BZP3 86 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 DECR2Q9NUI1 292 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 PLA2G3Q9NZ20 509 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 COQ3Q9NZJ6 369 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 SLC7A11Q9UPY5 501 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 M0R296 226 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 GEMIN2O14893 280 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 XRCC2O43543 280 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 LYL1P12980 280 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 ECI1P42126 302 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 IL15RAQ13261 267 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 SNTB1Q13884 538 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 OSR2Q8N2R0 312 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 NAXEQ8NCW5 288 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 ADAMTS17Q8TE56 1095 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 C2orf50Q96LR7 162 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 PRDM14Q9GZV8 571 aa18.04■□□□□ 0.48
CCDC88B-203ENST00000359902 ZNF816-ZNF321PA0A0X1KG74 233 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 A0A1B0GW55 424 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 FAM166BA8MTA8 275 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 F8VVB4 439 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 F8VWA3 439 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 CDX4O14627 284 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 SFTPBP07988 381 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 DUX4L2P0CJ85 424 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 DUX4L3P0CJ86 424 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 DUX4L4P0CJ87 422 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 DUX4L5P0CJ88 424 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 DUX4L6P0CJ89 424 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 DUX4L7P0CJ90 424 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 DTYMKP23919 212 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 OPRM1P35372 400 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 MAGEA5P43359 124 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 PLA2G2CQ5R387 149 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 PLCXD3Q63HM9 321 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 COLCA1Q6ZS62 124 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 TUSC5Q8IXB3 177 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 FBXL14Q8N1E6 418 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 POC1AQ8NBT0 407 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 OR10AD1Q8NGE0 317 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 SHARPINQ9H0F6 387 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 DNTTIP1Q9H147 329 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 LIME1Q9H400 295 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 IL36GQ9NZH8 169 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 DUX4Q9UBX2 424 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 HOXD4P09016 255 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 OR5H8P0DN80 308 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 ZNF708P17019 499 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 ITGA3P26006 1051 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 PRSS54Q6PEW0 395 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 BRICD5Q6PL45 260 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 STPG2Q8N412 459 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 MRPS24Q96EL2 167 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 TTTY12Q9BZ98 90 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 SLC6A15Q9H2J7 730 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 BCO1Q9HAY6 547 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 OR5AC2Q9NZP5 309 aa18.03■□□□□ 0.48
CCDC88B-203ENST00000359902 IFNA2P01563 188 aa18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 CTSDP07339 412 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 FCGR3AP08637 254 aa18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 HOXB5P09067 269 aa18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 PLEKHN1Q494U1 663 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 C9orf135Q5VTT2 229 aa18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 LINC00696Q6ZRV3 163 aa18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 STOML3Q8TAV4 291 aa18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 PARPBPQ9NWS1 579 aa18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 ABI3Q9P2A4 366 aa18.02■□□□□ 0.48
CCDC88B-203ENST00000359902 MT-CO3P00414 261 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 PPIAP62937 165 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 DHRS11Q6UWP2 260 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 SREK1IP1Q8N9Q2 155 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 OR51F2Q8NH61 342 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 DYRK2Q92630 601 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms