RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ACAA1P09110 424 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-203ENST00000354098 TMEM225BP0DP42 221 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 GALP22466 123 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 LYPD2Q6UXB3 125 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 MKXQ8IYA7 352 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 MUC20Q8N307 709 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-203ENST00000354098 YIPF6Q96EC8 236 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 COX4I2Q96KJ9 171 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 CEP19Q96LK0 163 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 TMUB1Q9BVT8 246 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 TXNL4BQ9NX01 149 aaKnown RBP18.53■□□□□ 0.56
SHMT1-203ENST00000354098 DNAJB11Q9UBS4 358 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 TRAV38-1A0A0B4J264 116 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 SHISA3A0PJX4 238 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 CEACAM18A8MTB9 384 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 TFAP2AP05549 437 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 CALCBP10092 127 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 BCL3P20749 454 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 MICBQ29980 383 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 ACP7Q6ZNF0 438 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 LYPD6Q86Y78 171 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 JAGN1Q8N5M9 183 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 TNFAIP8L1Q8WVP5 186 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 CHCHD6Q9BRQ6 235 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 HES4Q9HCC6 221 aa18.52■□□□□ 0.56
SHMT1-203ENST00000354098 CR1P17927 2039 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 TNFRSF13BO14836 293 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-203ENST00000354098 NXPH2O95156 264 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 CYB5AP00167 134 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 MUC1P15941 1255 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-203ENST00000354098 PTGFRP43088 359 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 SPICQ8N5J4 248 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 CPNE2Q96FN4 548 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-203ENST00000354098 GFI1Q99684 422 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 FAM192AQ9GZU8 254 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 RNF167Q9H6Y7 350 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 ZNF665Q9H7R5 613 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 CNTD2Q9H8S5 307 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 SMURF1Q9HCE7 757 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 RBFOX1Q9NWB1 397 aaKnown RBP18.51■□□□□ 0.55
SHMT1-203ENST00000354098 RASL12Q9NYN1 266 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 NLKQ9UBE8 527 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 PCDHB10Q9UN67 800 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 SSR3Q9UNL2 185 aa18.51■□□□□ 0.55
SHMT1-203ENST00000354098 TRAPPC2LH3BP13 241 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 CDRT1O95170 752 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 IGHV2-5P01817 119 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 SFTPBP07988 381 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 CD99P14209 185 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 FGF9P31371 208 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-203ENST00000354098 OR13F1Q8NGS4 319 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 C18orf12Q96KH6 178 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 SLITRK2Q9H156 845 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 IL36RNQ9UBH0 155 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 AK6Q9Y3D8 172 aaKnown RBP18.5■□□□□ 0.55
SHMT1-203ENST00000354098 LOC100506127A0A0U1RQW1 187 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 MEGF11A6BM72 1044 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 AMY2BP19961 511 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 SEC61A1P61619 476 aaKnown RBP18.5■□□□□ 0.55
SHMT1-203ENST00000354098 STUMQ69YW2 141 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 DCDC5Q6ZRR9 648 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 SAXO1Q8IYX7 474 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 NKAIN3Q8N8D7 197 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 ZSCAN4Q8NAM6 433 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-203ENST00000354098 PATZ1Q9HBE1 687 aaKnown RBP18.5■□□□□ 0.55
SHMT1-203ENST00000354098 HIVEP1P15822 2718 aa18.5■□□□□ 0.55
SHMT1-203ENST00000354098 A0A1B0GW55 424 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 OR2AT4A6NND4 320 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 FAM157AC9JC47 383 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 KDM4BO94953 1096 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 WNT2P09544 360 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 DUX4L2P0CJ85 424 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 DUX4L3P0CJ86 424 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 DUX4L4P0CJ87 422 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 DUX4L5P0CJ88 424 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 DUX4L6P0CJ89 424 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 DUX4L7P0CJ90 424 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 PSG2P11465 335 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 TMEM249Q2WGJ8 235 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 SMIM21Q3B7S5 101 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 DUX4L9Q6RFH8 374 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-203ENST00000354098 CDH26Q8IXH8 852 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 PNLDC1Q8NA58 520 aaKnown RBP18.49■□□□□ 0.55
SHMT1-203ENST00000354098 OR4D6Q8NGJ1 314 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 OR10K1Q8NGX5 313 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 ANGPTL6Q8NI99 470 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 C12orf43Q96C57 262 aaKnown RBP18.49■□□□□ 0.55
SHMT1-203ENST00000354098 CCL13Q99616 98 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 CENPOQ9BU64 300 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 DUX4Q9UBX2 424 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 ING4Q9UNL4 249 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 ACANP16112 2415 aa18.49■□□□□ 0.55
SHMT1-203ENST00000354098 IGKV1D-17A0A075B6S4 117 aa18.48■□□□□ 0.55
SHMT1-203ENST00000354098 ALDH3B2P48448 385 aa18.48■□□□□ 0.55
SHMT1-203ENST00000354098 KCNJ8Q15842 424 aa18.48■□□□□ 0.55
SHMT1-203ENST00000354098 ASCL4Q6XD76 172 aa18.48■□□□□ 0.55
SHMT1-203ENST00000354098 PXT1Q8NFP0 134 aa18.48■□□□□ 0.55
SHMT1-203ENST00000354098 EMG1Q92979 244 aaKnown RBP18.48■□□□□ 0.55
SHMT1-203ENST00000354098 ELL3Q9HB65 397 aaPredicted RBP18.48■□□□□ 0.55
SHMT1-203ENST00000354098 CTSZQ9UBR2 303 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms