RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PRSS54Q6PEW0 395 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 STOML3Q8TAV4 291 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 C2orf50Q96LR7 162 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 ZNF391Q9UJN7 358 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 MSGN1A6NI15 193 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 ATP6V1G2-DDX39BF2Z307 99 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 MPLP40238 635 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 ARRDC1-AS1Q9H2J1 176 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 RGCCQ9H4X1 137 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 ACKR4Q9NPB9 350 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 HSF4Q9ULV5 492 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 EDARQ9UNE0 448 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 CELSR3Q9NYQ7 3312 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 FREM1Q5H8C1 2179 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 IGKV1-12A0A0C4DH73 117 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 C9orf172C9J069 976 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 IFNA2P01563 188 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 IGKV1D-12P01611 117 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 OPRM1P35372 400 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 CTAG1AP78358 180 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 RAB32Q13637 225 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 PIGYQ3MUY2 71 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 OR51F2Q8NH61 342 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 CMSS1Q9BQ75 279 aaKnown RBP18.9■□□□□ 0.62
SHMT1-202ENST00000352886 GSKIPQ9P0R6 139 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 AHCTF1Q8WYP5 2266 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 TPT1P13693 172 aaKnown RBP18.9■□□□□ 0.62
SHMT1-202ENST00000352886 ECI1P42126 302 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 PLEKHN1Q494U1 663 aaPredicted RBP18.9■□□□□ 0.62
SHMT1-202ENST00000352886 TSPO2Q5TGU0 170 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 ASCL4Q6XD76 172 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 POC1AQ8NBT0 407 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 SULT4A1Q9BR01 284 aa18.9■□□□□ 0.62
SHMT1-202ENST00000352886 GEMIN2O14893 280 aaKnown RBP18.89■□□□□ 0.61
SHMT1-202ENST00000352886 FARS2O95363 451 aaKnown RBP18.89■□□□□ 0.61
SHMT1-202ENST00000352886 MMP7P09237 267 aaPredicted RBP18.89■□□□□ 0.61
SHMT1-202ENST00000352886 OR5H8P0DN80 308 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 LYL1P12980 280 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 CHATP28329 748 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 SRYQ05066 204 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 ZNF100Q8IYN0 542 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 BOLLQ8N9W6 283 aaKnown RBP18.89■□□□□ 0.61
SHMT1-202ENST00000352886 DDA1Q9BW61 102 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 SPRY4Q9C004 299 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 CYTL1Q9NRR1 136 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 NOSIPQ9Y314 301 aaKnown RBP18.89■□□□□ 0.61
SHMT1-202ENST00000352886 NEURL1O76050 574 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 ZNF883P0CG24 379 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 EDN3P14138 238 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 RBMXP38159 391 aaKnown RBP18.89■□□□□ 0.61
SHMT1-202ENST00000352886 PABPC1L2AQ5JQF8 200 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 PDSS1Q5T2R2 415 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 BRICD5Q6PL45 260 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 BAP18Q8IXM2 172 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 PIGCQ92535 297 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 DYRK2Q92630 601 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 SIGLEC12Q96PQ1 595 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 FAM117AQ9C073 453 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 FOXJ2Q9P0K8 574 aa18.89■□□□□ 0.61
SHMT1-202ENST00000352886 TERTO14746 1132 aaKnown RBP18.88■□□□□ 0.61
SHMT1-202ENST00000352886 MRPL33O75394 65 aaKnown RBP18.88■□□□□ 0.61
SHMT1-202ENST00000352886 APOC3P02656 99 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 SFTPBP07988 381 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 FCGR3AP08637 254 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 OR8B8Q15620 311 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 PLCXD3Q63HM9 321 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 OSR2Q8N2R0 312 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 ZBTB44Q8NCP5 570 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 CPEB3Q8NE35 698 aaKnown RBP18.88■□□□□ 0.61
SHMT1-202ENST00000352886 OR2M7Q8NG81 312 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 OR10AD1Q8NGE0 317 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 LIME1Q9H400 295 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 C1orf123Q9NWV4 160 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 PCDHB10Q9UN67 800 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 SLC7A11Q9UPY5 501 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 ZNF850A8MQ14 1090 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 ZNF587BE7ETH6 402 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 CTSDP07339 412 aaPredicted RBP18.88■□□□□ 0.61
SHMT1-202ENST00000352886 CELA3AP09093 270 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 FUT6P51993 359 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 S100A10P60903 97 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 IL15RAQ13261 267 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 SGPP2Q8IWX5 399 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 FBXL14Q8N1E6 418 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 SLC30A7Q8NEW0 376 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 OR1S2Q8NGQ3 325 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 TMEM45BQ96B21 275 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 FAM173AQ9BQD7 235 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 HES7Q9BYE0 225 aa18.88■□□□□ 0.61
SHMT1-202ENST00000352886 ZNF703Q9H7S9 590 aaPredicted RBP18.88■□□□□ 0.61
SHMT1-202ENST00000352886 TSPAN4O14817 238 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 SIGLEC5O15389 551 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 PET100P0DJ07 73 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 DTYMKP23919 212 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 NAAAQ02083 359 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 PDZK1IP1Q13113 114 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 AIMP2Q13155 320 aaKnown RBP18.87■□□□□ 0.61
SHMT1-202ENST00000352886 DECR2Q9NUI1 292 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 ASF1BQ9NVP2 202 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 NECAP2Q9NVZ3 263 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms