RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PRKACBP22694 351 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 CHATP28329 748 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 PPIAP62937 165 aaKnown RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 CYCSP99999 105 aaKnown RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 IL15RAQ13261 267 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 SNTB1Q13884 538 aaKnown RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 ARL6IP1Q15041 203 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 PAN3Q58A45 887 aaKnown RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 C9orf135Q5VTT2 229 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 NSUN5P2Q63ZY6 315 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 ELP2Q6IA86 826 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 OR51F2Q8NH61 342 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 PIK3IP1Q96FE7 263 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 CYTL1Q9NRR1 136 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 SLC7A10Q9NS82 523 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 ANXA10Q9UJ72 324 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 BOKQ9UMX3 212 aaPredicted RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 SHANK1Q9Y566 2161 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 LOC105371267A0A1B0GV96 52 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 F8VVB4 439 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 F8VWA3 439 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 RRP8O43159 456 aaKnown RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 HOXB5P09067 269 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 RAB32Q13637 225 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 DAZAP2Q15038 168 aaPredicted RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 PDCD1Q15116 288 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 OR8B8Q15620 311 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 LHFPL2Q6ZUX7 228 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 OR10AD1Q8NGE0 317 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 PHYHIPLQ96FC7 376 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 METTL8Q9H825 291 aaKnown RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 ACKR4Q9NPB9 350 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 RYDENQ9NUL5 291 aaKnown RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 PLA2G3Q9NZ20 509 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 HSF4Q9ULV5 492 aa13.38□□□□□ -0.27
UPF3B-202ENST00000345865 NOSIPQ9Y314 301 aaKnown RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 DOCK7Q96N67 2140 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 FAM221AA4D161 298 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 CD59P13987 128 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 CLDN18P56856 261 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 SURF2Q15527 256 aaPredicted RBP13.37□□□□□ -0.27
UPF3B-202ENST00000345865 RTL6Q6ICC9 239 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 CALHM1Q8IU99 346 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 ZNF100Q8IYN0 542 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 FBXL14Q8N1E6 418 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 POC1AQ8NBT0 407 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 PIGCQ92535 297 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 TMEM45BQ96B21 275 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 MARS2Q96GW9 593 aaKnown RBP13.37□□□□□ -0.27
UPF3B-202ENST00000345865 FAM173AQ9BQD7 235 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 FAM117AQ9C073 453 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 DECR2Q9NUI1 292 aa13.37□□□□□ -0.27
UPF3B-202ENST00000345865 FAM166BA8MTA8 275 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 FCGR3AP08637 254 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 SP9P0CG40 484 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 LYL1P12980 280 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 MAGEA5P43359 124 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 PCBD1P61457 104 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 PDZK1IP1Q13113 114 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 Q6ZPA2 131 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 BATF2Q8N1L9 274 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 BOLLQ8N9W6 283 aaKnown RBP13.36□□□□□ -0.27
UPF3B-202ENST00000345865 C1QTNF5Q9BXJ0 243 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 CRIM1Q9NZV1 1036 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 FAM186AA6NE01 2351 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 IGKV3D-15A0A087WSY6 115 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 A0A096LPE4 126 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 A0A1W2PPZ6 126 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 ZNF503-AS2A6NEH8 195 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 MRPL33O75394 65 aaKnown RBP13.36□□□□□ -0.27
UPF3B-202ENST00000345865 OR5H8P0DN80 308 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 ARF1P84077 181 aaKnown RBP13.36□□□□□ -0.27
UPF3B-202ENST00000345865 BTN1A1Q13410 526 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 PRSS54Q6PEW0 395 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 TUSC5Q8IXB3 177 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 STOML3Q8TAV4 291 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 C2orf50Q96LR7 162 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 CMSS1Q9BQ75 279 aaKnown RBP13.36□□□□□ -0.27
UPF3B-202ENST00000345865 SLC6A15Q9H2J7 730 aa13.36□□□□□ -0.27
UPF3B-202ENST00000345865 SPENQ96T58 3664 aaKnown RBP13.35□□□□□ -0.27
UPF3B-202ENST00000345865 KMT2EQ8IZD2 1858 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 CDX4O14627 284 aaPredicted RBP13.35□□□□□ -0.27
UPF3B-202ENST00000345865 CCL2P13500 99 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 RBM39Q14498 530 aaKnown RBP13.35□□□□□ -0.27
UPF3B-202ENST00000345865 OR1C1Q15619 314 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 ABHD17BQ5VST6 288 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 PLCXD3Q63HM9 321 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 OSR2Q8N2R0 312 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 SPSB4Q96A44 273 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 DNTTIP1Q9H147 329 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 RGCCQ9H4X1 137 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 GSKIPQ9P0R6 139 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 ZNF391Q9UJN7 358 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 C14orf166Q9Y224 244 aaKnown RBP13.35□□□□□ -0.27
UPF3B-202ENST00000345865 IFNA2P01563 188 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 FUT6P51993 359 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 DCAF10Q5QP82 559 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 PXDC1Q5TGL8 231 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 LINC00696Q6ZRV3 163 aa13.35□□□□□ -0.27
UPF3B-202ENST00000345865 COLCA1Q6ZS62 124 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms