RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 OR8I2Q8N0Y5 310 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 FOXC2Q99958 501 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 SH2D2AQ9NP31 389 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 FAM240BA0A1B0GVZ2 78 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 F5H5P2 479 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 H3BSA7 217 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 TRMUO75648 421 aaKnown RBP7.31□□□□□ -1.24
HMGB1-203ENST00000341423 SLC2A10O95528 541 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 EFEMP2O95967 443 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 MUC1P15941 1255 aaPredicted RBP7.31□□□□□ -1.24
HMGB1-203ENST00000341423 NPBWR2P48146 333 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 SRPXP78539 464 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 C15orf53Q8NAA6 179 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 OR2T11Q8NH01 316 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 EGLN2Q96KS0 407 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 WDR13Q9H1Z4 485 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 ISYNA1Q9NPH2 558 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 GOLT1BQ9Y3E0 138 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 SBK3P0C264 359 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF616Q08AN1 781 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 TNK1Q13470 666 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 HABP2Q14520 560 aaPredicted RBP7.31□□□□□ -1.24
HMGB1-203ENST00000341423 CD300LFQ8TDQ1 290 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 PP6455Q8WZ26 134 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 RAB3CQ96E17 227 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 PIPOXQ9P0Z9 390 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 COMMD3Q9UBI1 195 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 LY75O60449 1722 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 ARRDC5A6NEK1 342 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 IDH3AP50213 366 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 APOC4P55056 127 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 DHODHQ02127 395 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 MEF2CQ06413 473 aaPredicted RBP7.31□□□□□ -1.24
HMGB1-203ENST00000341423 PCK2Q16822 640 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 PGGHGQ32M88 737 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 ACTBL2Q562R1 376 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 BTNL8Q6UX41 500 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF662Q6ZS27 426 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 OR9G1Q8NH87 305 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 EEF1AKMT3Q96AZ1 226 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 WDYHV1Q96HA8 205 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF225Q9UK10 706 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 TAF1LQ8IZX4 1826 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 MEX3AA1L020 520 aaKnown RBP7.31□□□□□ -1.24
HMGB1-203ENST00000341423 PGPA6NDG6 321 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 GPX5O75715 221 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 CYB5R3P00387 301 aaPredicted RBP7.31□□□□□ -1.24
HMGB1-203ENST00000341423 HTR2CP28335 458 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 GALR1P47211 349 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 TMED1Q13445 227 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 AADACL4Q5VUY2 407 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 DHRS4L2Q6PKH6 230 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 LRRC75A-AS1Q8N1F1 130 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 OR9I1Q8NGQ6 314 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 SPSB1Q96BD6 273 aa7.31□□□□□ -1.24
HMGB1-203ENST00000341423 DCAF13Q9NV06 445 aaKnown RBP7.31□□□□□ -1.24
HMGB1-203ENST00000341423 PLXNB2O15031 1838 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 ZFP36P26651 326 aaKnown RBP7.3□□□□□ -1.24
HMGB1-203ENST00000341423 VHLP40337 213 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 TEX38Q6PEX7 206 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF546Q86UE3 836 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 C9orf40Q8IXQ3 194 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 BEND2Q8NDZ0 799 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 OR6T1Q8NGN1 323 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 BIRC8Q96P09 236 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 J3QT63 122 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 K7N7A8 449 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 MGST3O14880 152 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 APOL3O95236 402 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 NTN1O95631 604 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 CELA3AP09093 270 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 OSMP13725 252 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 OPRK1P41145 380 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 TAS2R19P59542 299 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 ISL1P61371 349 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 LSM3P62310 102 aaKnown RBP7.3□□□□□ -1.24
HMGB1-203ENST00000341423 OR2B11Q5JQS5 317 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 SLC35D3Q5M8T2 416 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 NKAIN3Q8N8D7 197 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 TPPP3Q9BW30 176 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 TMEM38BQ9NVV0 291 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 PSG11Q9UQ72 335 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 DNAJC15Q9Y5T4 150 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 PCM1Q15154 2024 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 MYH4Q9Y623 1939 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 TRAV18A0A075B6X5 111 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 XKRY2A2RUG3 117 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 SSX5O60225 188 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 F12P00748 615 aaPredicted RBP7.3□□□□□ -1.24
HMGB1-203ENST00000341423 RFPL3SP0C7P2 107 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 PSMB10P40306 273 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 TAF9Q16594 264 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 FAM120AOSQ5T036 256 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 DTX1Q86Y01 620 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 BPIFCQ8NFQ6 507 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 OR8J2Q8NGG1 315 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 MRGPRDQ8TDS7 321 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 FCAMRQ8WWV6 532 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 ATOH8Q96SQ7 321 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 EHFQ9NZC4 300 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms