RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 SCD5Q86SK9 330 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF547Q8IVP9 402 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 OR8I2Q8N0Y5 310 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF676Q8N7Q3 588 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 C1orf127Q8N9H9 656 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 OR51G1Q8NGK1 321 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 OR10X1Q8NGY0 326 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF418Q8TF45 676 aaPredicted RBP3.68□□□□□ -1.82
NEDD4-201ENST00000338963 NEURL3Q96EH8 262 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 TMEM191AQ9H0A3 160 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 SLC7A10Q9NS82 523 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 PGPEP1Q9NXJ5 209 aa3.68□□□□□ -1.82
NEDD4-201ENST00000338963 H0YL77 283 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 H7C1C5 153 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 J3QRE1 110 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 DEDDO75618 318 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 PPP1R3DO95685 299 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 THBDP07204 575 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 CTSDP07339 412 aaPredicted RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 AZU1P20160 251 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 DNASE1L1P49184 302 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 OLIG2Q13516 323 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ESPNLQ6ZVH7 1005 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF439Q8NDP4 499 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 OR4K1Q8NGD4 311 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 OR10S1Q8NGN2 331 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 OR13G1Q8NGZ3 307 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF519Q8TB69 540 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 PLPPR1Q8TBJ4 325 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ZG16BQ96DA0 208 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 PSMB11A5LHX3 300 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 OR4C45A6NMZ5 311 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 CEACAM18A8MTB9 384 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 KBTBD11O94819 623 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 HERV-K104P63124 156 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF85Q03923 595 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 PHYHD1Q5SRE7 291 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 LRP11Q86VZ4 500 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 DOLPP1Q86YN1 238 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 GRAMD2BQ96HH9 432 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ATP5SQ99766 215 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 RABAC1Q9UI14 185 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 B3GALT5Q9Y2C3 310 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 WASHC3Q9Y3C0 194 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 MYH7P12883 1935 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 LAMA4Q16363 1823 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 LAMB1P07942 1786 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 TRBV5-5A0A0J9YX44 114 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 FITM1A5D6W6 292 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 FBLL1A6NHQ2 334 aaKnown RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 PITX3O75364 302 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 HYPMO75409 117 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 DDAH2O95865 285 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 MAS1P04201 325 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 PSMB3P49720 205 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ASCL1P50553 236 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 CLDN6P56747 220 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 FXYD6P3P58550 94 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 KRTDAPP60985 99 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 YPEL3P61236 119 aaPredicted RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 RPS15P62841 145 aaKnown RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 C18orf21Q32NC0 220 aaPredicted RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF585BQ52M93 769 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 CYB561D1Q8N8Q1 229 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 OR1B1Q8NGR6 318 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 DERL3Q96Q80 235 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 HINT3Q9NQE9 182 aaKnown RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 MANBALQ9NQG1 85 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 LSM5Q9Y4Y9 91 aaKnown RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 MRPS18BQ9Y676 258 aaKnown RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 A0A1B0GTL3 188 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 MDFIC2A0A1B0GVS7 189 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 A0A1W2PR80 420 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 hADV38S2A0JD32 116 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF732B4DXR9 585 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 M0QYG6 137 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 GCM2O75603 506 aaPredicted RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 EFEMP2O95967 443 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 F11P03951 625 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 CCSMST1Q4G0I0 132 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 CLEC12AQ5QGZ9 265 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 VAX1Q5SQQ9 334 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 C16orf82Q7Z2V1 217 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 LANCL2Q9NS86 450 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 HSF4Q9ULV5 492 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 HS3ST3A1Q9Y663 406 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 TNRC6CQ9HCJ0 1690 aaKnown RBP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 TACR1P25103 407 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 PTGER4P35408 488 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF74Q16587 644 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.67□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF787Q6DD87 383 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 HOGA1Q86XE5 327 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 OR4N5Q8IXE1 308 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 BMPERQ8N8U9 685 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 C5orf17Q8NAS9 161 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 OR1N2Q8NGR9 330 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 OR5H2Q8NGV7 314 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 CLDND2Q8NHS1 167 aa3.67□□□□□ -1.82
NEDD4-201ENST00000338963 SLC38A5Q8WUX1 472 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms