RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ZNF17P17021 662 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 NKAIN2Q5VXU1 208 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 RXFP4Q8TDU9 374 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 SARAFQ96BY9 339 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 ADGRG7Q96K78 797 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 WDR1O75083 606 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 LILRA6Q6PI73 481 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 GLCCI1Q86VQ1 547 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 A0A1B0GU03 582 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 A0A1W2PPQ1 181 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 CDRT15L2A8MXV6 281 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 WDR74Q6RFH5 385 aaPredicted RBP9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 UBAC2Q8NBM4 344 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 COL4A1P02462 1669 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 CORO6Q6QEF8 472 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 PTP4A1Q93096 173 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 ARHGAP5-AS1Q96IT6 56 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 MIXL1Q9H2W2 232 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 HRO43593 1189 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 ZNF547Q8IVP9 402 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 MRM2Q9UI43 246 aaKnown RBP9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 MTCH2Q9Y6C9 303 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 GABRA4P48169 554 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 FAM3BP58499 235 aaPredicted RBP9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 ZNF718Q3SXZ3 478 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 ATG4DQ86TL0 474 aaPredicted RBP9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 OR5C1Q8NGR4 320 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 TMEM147Q9BVK8 224 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 NPIPB13A6NJU9 1138 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 DHRS7CA6NNS2 312 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 NPIPB4C9JG80 1138 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 SDCBPO00560 298 aaPredicted RBP9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 BMI1P35226 326 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 AKR1C3P42330 323 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 SPEM1Q8N4L4 309 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 EMC6Q9BV81 110 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 KIAA1456Q9P272 454 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 ANXA10Q9UJ72 324 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 STARD10Q9Y365 291 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 TRAPPC1Q9Y5R8 145 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 C3orf85A0A1B0GTC6 90 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 CDC42EP2O14613 210 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 PLA2G10O15496 165 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 OR2J2O76002 312 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 CST2P09228 141 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 EXTL1Q92935 676 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 CDCP1Q9H5V8 836 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 MTCH1Q9NZJ7 389 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 OSGIN2Q9Y236 505 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 MPC1Q9Y5U8 109 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 FER1L5A0AVI2 2057 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 OR4C45A6NMZ5 311 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 M0R143 59 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 ZNF154Q13106 437 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 OLIG3Q7RTU3 272 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 ZADH2Q8N4Q0 377 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 LINC01555Q8NAE3 123 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 OR10X1Q8NGY0 326 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 FAM173AQ9BQD7 235 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 PITPNC1Q9UKF7 332 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 TRGV10A0A0A0MS01 117 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 OR10J4P0C629 311 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 PGA4P0DJD7 388 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 PGA5P0DJD9 388 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 FAHP16930 419 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 OPRM1P35372 400 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 PKIAP61925 76 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 MPV17LQ2QL34 196 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 WBP2Q969T9 261 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 GABRG3Q99928 467 aa9.17□□□□□ -0.94
CCDC88A-202ENST00000336838 GNG4P50150 75 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 PARM1Q6UWI2 310 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 OR5D13Q8NGL4 314 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 CHST5Q9GZS9 411 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 GHITMQ9H3K2 345 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 PITX3O75364 302 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 SLC25A6P12236 298 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 HLA-GP17693 338 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 RPEL1Q2QD12 228 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 OR4D9Q8NGE8 314 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 TMEM56Q96MV1 263 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 TNFSF12O43508 249 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 DEDDO75618 318 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 SERF2P84101 59 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 FAM3AP98173 230 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 LCN15Q6UWW0 184 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 SLC24A4Q8NFF2 622 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 TNFSF18Q9UNG2 199 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 MAP1LC3B2A6NCE7 125 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 ERVFC1-1P60608 527 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 RAB24Q969Q5 203 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 PHF7Q9BWX1 381 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 MAP1LC3BQ9GZQ8 125 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 A0A0U1RQV5 110 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 UBE2L5PA0A1B0GUS4 154 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 PPIAP62937 165 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 OR5B3Q8NH48 314 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 TWSG1Q9GZX9 223 aa9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 C6orf106Q9H6K1 298 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-202ENST00000336838 TRDCB7Z8K6 153 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms