RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 OR2D3Q8NGH3 330 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 OR10D3Q8NH80 312 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 PRSS3P2Q8NHM4 247 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 CRYBG1Q9Y4K1 1723 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 TEX50A0A1B0GTY4 177 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 CDX4O14627 284 aaPredicted RBP11.26□□□□□ -0.61
SDC3-201ENST00000336798 KCNAB3O43448 404 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 OR4A8P0C604 315 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 EPXP11678 715 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 HES3Q5TGS1 186 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 B3GNTL1Q67FW5 361 aaPredicted RBP11.26□□□□□ -0.61
SDC3-201ENST00000336798 DYRK2Q92630 601 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 PECRQ9BY49 303 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 ZNF32P17041 273 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 HTR1DP28221 377 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 GALR1P47211 349 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 TRIP6Q15654 476 aaKnown RBP11.26□□□□□ -0.61
SDC3-201ENST00000336798 CALHM3Q86XJ0 350 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 PTOV1Q86YD1 416 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 PRRX2Q99811 253 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 AP5S1Q9NUS5 200 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 PRR13Q9NZ81 148 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 OR5V1Q9UGF6 321 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 TMEM272A0A1B0GTI8 110 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 GPR3P46089 330 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 EVX1P49640 407 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 DGAT2L7PQ6IED9 249 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 LINC00052Q96N35 136 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 KCNK15Q9H427 330 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 RHOFQ9HBH0 211 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 FZD6O60353 706 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 TMIGD3P0DMS9 266 aaPredicted RBP11.26□□□□□ -0.61
SDC3-201ENST00000336798 PSMB2P49721 201 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 KLF3P57682 345 aaPredicted RBP11.26□□□□□ -0.61
SDC3-201ENST00000336798 TCTAP57738 103 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 HIST1H3AP68431 136 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 PJVKQ0ZLH3 352 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 ABI3BPQ7Z7G0 1075 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 SYS1Q8N2H4 156 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 CRISPLD2Q9H0B8 497 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 MMP25Q9NPA2 562 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 MTCH2Q9Y6C9 303 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 LRRC37A3O60309 1634 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 FER1L6Q2WGJ9 1857 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 LSM11P83369 360 aaKnown RBP eCLIP11.26□□□□□ -0.61
SDC3-201ENST00000336798 KISS1Q15726 138 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 NCMAPQ5T1S8 102 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 TMEM215Q68D42 235 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 SLC35E4Q6ICL7 350 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 ZNF793Q6ZN11 406 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 LINC00469Q8N7U9 141 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 MCHR2Q969V1 340 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 AKIP1Q9NQ31 210 aa11.26□□□□□ -0.61
SDC3-201ENST00000336798 TTRP02766 147 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 MGPP08493 103 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 CHRNA7P36544 502 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 GNG4P50150 75 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 SLC38A11Q08AI6 406 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 AMER3Q8N944 861 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 CDCA4Q9BXL8 241 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 IGHV3-21A0A0B4J1V1 117 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 A0A1B0GTQ1 180 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 TCRBV5S2A0A599 114 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 TUBAL3A6NHL2 446 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 EDIL3O43854 480 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 LIMS3P0CW19 117 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 LIMS4P0CW20 117 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 PPP1CAP62136 330 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 ACER2Q5QJU3 275 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 SLC25A19Q9HC21 320 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 UQCC1Q9NVA1 299 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 CLDN20P56880 219 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 MAJINQ3KP22 176 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 CLLU1Q5K131 121 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 GGNBP1Q5YKI7 109 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 TMEM108Q6UXF1 575 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 OTOSQ8NHW6 89 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 SBK3P0C264 359 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 PRRX1P54821 245 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 ZNF141Q15928 474 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 WDR38Q5JTN6 314 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 ABLIM2Q6H8Q1 611 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 DND1Q8IYX4 353 aaKnown RBP11.25□□□□□ -0.61
SDC3-201ENST00000336798 NT5CQ8TCD5 201 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 DOK1Q99704 481 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 BCL2L11O43521 198 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 HRASP01112 189 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 CD1EP15812 388 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 LRP11Q86VZ4 500 aa11.25□□□□□ -0.61
SDC3-201ENST00000336798 OR3A1P47881 315 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 ZNF66Q6ZN08 573 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 FLYWCH2Q96CP2 140 aaKnown RBP11.24□□□□□ -0.61
SDC3-201ENST00000336798 SCMH1Q96GD3 660 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 EAF1Q96JC9 268 aaPredicted RBP11.24□□□□□ -0.61
SDC3-201ENST00000336798 RHOVQ96L33 236 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 RAB1BQ9H0U4 201 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 OCIAD1Q9NX40 245 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 RNF24Q9Y225 148 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 TRBV23-1A0A0A0MS06 115 aa11.24□□□□□ -0.61
SDC3-201ENST00000336798 B4GALNT1Q00973 533 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms