RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SC5DO75845 299 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 YEATS4O95619 227 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 CATP04040 527 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 NQO2P16083 231 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 GABRG2P18507 467 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 PGAM1P18669 254 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 GGT1P19440 569 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 BGNP21810 368 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 F2RP25116 425 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 IL12BP29460 328 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 CEACAM6P40199 344 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 PSMD7P51665 324 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 ARPC4P59998 168 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 RAP1AP62834 184 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 PPIDQ08752 370 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 PSG3Q16557 428 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 LINC00483Q53H64 154 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 C5orf47Q569G3 176 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 THOC7Q6I9Y2 204 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 APOBEC3HQ6NTF7 200 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 WDR82Q6UXN9 313 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 NPSR1Q6W5P4 371 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 TMPRSS11AQ6ZMR5 421 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 CCDC121Q6ZUS5 278 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 NCCRP1Q6ZVX7 275 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 UNC93AQ86WB7 457 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 HORMAD1Q86X24 394 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 SELENOHQ8IZQ5 122 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 PGAM4Q8N0Y7 254 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 OR8K1Q8NGG5 319 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 OR10J6PQ8NGY7 276 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 OR5W2Q8NH69 310 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 ANGPTL6Q8NI99 470 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 SUN5Q8TC36 379 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 ABHD3Q8WU67 409 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 PDCD6IPQ8WUM4 868 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 APH1BQ8WW43 257 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 MRGPRFQ96AM1 343 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 TM4SF18Q96CE8 201 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 CENPNQ96H22 339 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF317Q96PQ6 595 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 NAPGQ99747 312 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 MICU1Q9BPX6 476 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 LLPHQ9BRT6 129 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 AGMATQ9BSE5 352 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 CALN1Q9BXU9 219 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 FRMD8P1Q9BZ68 369 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 SYT4Q9H2B2 425 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 GOLPH3Q9H4A6 298 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 ARMC7Q9H6L4 198 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 HMG20AQ9NP66 347 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 SLC17A7Q9P2U7 560 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 UVRAGQ9P2Y5 699 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 CLEC2DQ9UHP7 191 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF222Q9UK12 451 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 C15orf41Q9Y2V0 281 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 YTHDF2Q9Y5A9 579 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 KCNE3Q9Y6H6 103 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 V9GYY9 64 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 PRRC2BQ5JSZ5 2229 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 PIEZO2Q9H5I5 2752 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 RTL1A6NKG5 1358 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 ROCK2O75116 1388 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 LRRC37AA6NMS7 1700 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 IGLV1-36A0A0B4J1U3 117 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 A6NDN8 102 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 HACD1B0YJ81 288 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 GABRPO00591 440 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 NDUFS6O75380 124 aaKnown RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ZMPSTE24O75844 475 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 LCA5LO95447 670 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 HPRT1P00492 218 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 CST4P01036 141 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 BCHEP06276 602 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 MRPL3P09001 348 aaKnown RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 OR5H8P0DN80 308 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ATF6P18850 670 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 USF1P22415 310 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 WARSP23381 471 aaKnown RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 MAS1LP35410 378 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 HTR2BP41595 481 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 RAB7AP51149 207 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 FABP6P51161 128 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF138P52744 262 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF121P58317 390 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ESRRGP62508 458 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 SLC35B1P78383 322 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 TNXAQ16473 311 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ATP6V1FQ16864 119 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 NDUFAF6Q330K2 333 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 PTPN20Q4JDL3 420 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 GCSAMLQ5JQS6 135 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 RWDD4Q6NW29 188 aaKnown RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 FAM173BQ6P4H8 233 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 Q6ZR03 302 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ABHD12BQ7Z5M8 362 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ERO1BQ86YB8 467 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF695Q8IW36 515 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 CD302Q8IX05 232 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 UBALD2Q8IYN6 164 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms