RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TM4SF19Q96DZ7 209 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 FAHD2AQ96GK7 314 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 VN1R1Q9GZP7 353 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 UCK1Q9HA47 277 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 ST3GAL6Q9Y274 331 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 POMT1Q9Y6A1 747 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 ARGFXA6NJG6 315 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 OR3A4PP47883 348 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 NR2C2APQ86WQ0 139 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 CPT1CQ8TCG5 803 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 VOPP1Q96AW1 172 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 PLEKHF2Q9H8W4 249 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 ASXL3Q9C0F0 2248 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 G3V3Q6 166 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 EPHA8P29322 1005 aaPredicted RBP13.63□□□□□ -0.23
SHH-201ENST00000297261 ZNF90Q03938 601 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 PMS2P11Q13670 270 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 KISS1Q15726 138 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 TOMM20LQ6UXN7 152 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 NMES1Q9C002 83 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 PRDM6Q9NQX0 595 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 KLHDC2Q9Y2U9 406 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 TBX6O95947 436 aaPredicted RBP13.63□□□□□ -0.23
SHH-201ENST00000297261 OR5AC1P0C628 307 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 SLC25A4P12235 298 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 CARD18P57730 90 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 MESTQ5EB52 335 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 ZNF813Q6ZN06 617 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.63□□□□□ -0.23
SHH-201ENST00000297261 ASB5Q8WWX0 329 aa13.63□□□□□ -0.23
SHH-201ENST00000297261 PACRGQ96M98 296 aaPredicted RBP13.63□□□□□ -0.23
SHH-201ENST00000297261 KIR2DS1A0A191URI9 304 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 XKRY2A2RUG3 117 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 RBFOX3A6NFN3 312 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 SHISA8B8ZZ34 492 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 C17orf112F2Z3M2 114 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 RER1O15258 196 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 GATCO43716 136 aaKnown RBP13.62□□□□□ -0.23
SHH-201ENST00000297261 METTL15P1P0C7V9 234 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 CD200P41217 278 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 KIR2DS4P43632 304 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 PSG6Q00889 435 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 CATR1Q13166 79 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 KIR2DS1Q14954 304 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 ZNF574Q6ZN55 896 aaPredicted RBP13.62□□□□□ -0.23
SHH-201ENST00000297261 OR2C3Q8N628 320 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 DMBX1Q8NFW5 382 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 IGHV3-64DA0A0J9YX35 117 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 A6NCN8 305 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 HRKO00198 91 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 SKP2Q13309 424 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 FAM234AQ9H0X4 552 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 CDH20Q9HBT6 801 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 HEYLQ9NQ87 328 aaPredicted RBP13.62□□□□□ -0.23
SHH-201ENST00000297261 C1QL1O75973 258 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 APLNRP35414 380 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 UBE2NP61088 152 aaKnown RBP13.62□□□□□ -0.23
SHH-201ENST00000297261 FBXL14Q8N1E6 418 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 OR10J5Q8NHC4 309 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 FAAP24Q9BTP7 215 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 OR51M1Q9H341 326 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 EPPINO95925 133 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 MPGP29372 298 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 ECH1Q13011 328 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 MICBQ29980 383 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 LANCL3Q6ZV70 420 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 SLC25A26Q70HW3 274 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 THOC3Q96J01 351 aaKnown RBP13.62□□□□□ -0.23
SHH-201ENST00000297261 ZDHHC11Q9H8X9 412 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 PPP1R3CQ9UQK1 317 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 SPTA1P02549 2419 aa13.62□□□□□ -0.23
SHH-201ENST00000297261 CBY3A6NI87 242 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 LINC00587B1AMM8 73 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 H0Y8G0 127 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 DVL1O14640 695 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 MRPL33O75394 65 aaKnown RBP13.61□□□□□ -0.23
SHH-201ENST00000297261 CTSBP07858 339 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 MDKP21741 143 aaPredicted RBP13.61□□□□□ -0.23
SHH-201ENST00000297261 KRTDAPP60985 99 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 ZNF117Q03924 483 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 IQCJQ1A5X6 159 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 HFEQ30201 348 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 JMJD6Q6NYC1 403 aaPredicted RBP13.61□□□□□ -0.23
SHH-201ENST00000297261 CDC20BQ86Y33 519 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 B4GALT7Q9UBV7 327 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 FOXS1O43638 330 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 POLR2GP62487 172 aaKnown RBP eCLIP13.61□□□□□ -0.23
SHH-201ENST00000297261 HLA-DRB3P79483 266 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 TGIF1Q15583 401 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 C2orf68Q2NKX9 166 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 PABPC1L2AQ5JQF8 200 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 DCAF12Q5T6F0 453 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 ROBO4Q8WZ75 1007 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 RHOVQ96L33 236 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 OR5AC2Q9NZP5 309 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 A0A1W2PNV4 684 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 PHYHD1Q5SRE7 291 aa13.61□□□□□ -0.23
SHH-201ENST00000297261 H3BMH7 237 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 NRASP01111 189 aa13.6□□□□□ -0.23
SHH-201ENST00000297261 TCN2P20062 427 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms