RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 GEMIN2O14893 280 aaKnown RBP17.4■□□□□ 0.38
VPS53-201ENST00000291074 PTGER4P35408 488 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 CLDN18P56856 261 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 PCBD1P61457 104 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 MOB3CQ70IA8 216 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 GALNT11Q8NCW6 608 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 PXT1Q8NFP0 134 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 CALHM2Q9HA72 323 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 RYDENQ9NUL5 291 aaKnown RBP17.4■□□□□ 0.38
VPS53-201ENST00000291074 IL17BQ9UHF5 180 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 A8MXK9 166 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 CDX4O14627 284 aaPredicted RBP17.39■□□□□ 0.37
VPS53-201ENST00000291074 SFTPBP07988 381 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 FGF2P09038 288 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 NUP62P37198 522 aaPredicted RBP17.39■□□□□ 0.37
VPS53-201ENST00000291074 ARF1P84077 181 aaKnown RBP17.39■□□□□ 0.37
VPS53-201ENST00000291074 DCAF10Q5QP82 559 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 PLCXD3Q63HM9 321 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 LHFPL2Q6ZUX7 228 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 TUSC5Q8IXB3 177 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 BVESQ8NE79 360 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 SLC25A32Q9H2D1 315 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 LIME1Q9H400 295 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 RAB18Q9NP72 206 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 SESN1Q9Y6P5 492 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 CA11O75493 328 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 HOXB5P09067 269 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 CCL2P13500 99 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 ARL6IP1Q15041 203 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 C3AR1Q16581 482 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 FBXL14Q8N1E6 418 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 TTTY12Q9BZ98 90 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 METTL8Q9H825 291 aaKnown RBP17.39■□□□□ 0.37
VPS53-201ENST00000291074 ACKR4Q9NPB9 350 aa17.39■□□□□ 0.37
VPS53-201ENST00000291074 FARS2O95363 451 aaKnown RBP17.38■□□□□ 0.37
VPS53-201ENST00000291074 CCNOP22674 350 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 PDSS1Q5T2R2 415 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 DHRS13Q6UX07 377 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 FNDC9Q8TBE3 224 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 TMEM45BQ96B21 275 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 OR5AC2Q9NZP5 309 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 ANXA10Q9UJ72 324 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 TERTO14746 1132 aaKnown RBP17.38■□□□□ 0.37
VPS53-201ENST00000291074 CHATP28329 748 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 STPG2Q8N412 459 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 OR10AD1Q8NGE0 317 aa17.38■□□□□ 0.37
VPS53-201ENST00000291074 CMSS1Q9BQ75 279 aaKnown RBP17.38■□□□□ 0.37
VPS53-201ENST00000291074 MSGN1A6NI15 193 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 OR8B8Q15620 311 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 TMEM164Q5U3C3 297 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 RTL6Q6ICC9 239 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 OR51F2Q8NH61 342 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 MS4A7Q9GZW8 240 aaPredicted RBP17.37■□□□□ 0.37
VPS53-201ENST00000291074 B4GALT7Q9UBV7 327 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 C14orf166Q9Y224 244 aaKnown RBP17.37■□□□□ 0.37
VPS53-201ENST00000291074 IGKV3D-15A0A087WSY6 115 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 ZNF503-AS2A6NEH8 195 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 TSPAN9O75954 239 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 HLA-HP01893 362 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 PPA1Q15181 289 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 ELP2Q6IA86 826 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 CALHM1Q8IU99 346 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 BARX1Q9HBU1 254 aaPredicted RBP17.37■□□□□ 0.37
VPS53-201ENST00000291074 FBXO9Q9UK97 447 aaPredicted RBP17.37■□□□□ 0.37
VPS53-201ENST00000291074 R4GN57 208 aa17.37■□□□□ 0.37
VPS53-201ENST00000291074 A0A0B4J2A0 478 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 MT-CO3P00414 261 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 CYCSP99999 105 aaKnown RBP17.36■□□□□ 0.37
VPS53-201ENST00000291074 PDZK1IP1Q13113 114 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 ASCL4Q6XD76 172 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 HSD17B13Q7Z5P4 300 aaPredicted RBP17.36■□□□□ 0.37
VPS53-201ENST00000291074 TMEM251Q8N6I4 163 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 ADAMTS17Q8TE56 1095 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 CPNE2Q96FN4 548 aaPredicted RBP17.36■□□□□ 0.37
VPS53-201ENST00000291074 MARS2Q96GW9 593 aaKnown RBP17.36■□□□□ 0.37
VPS53-201ENST00000291074 GPR87Q9BY21 358 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 CRIM1Q9NZV1 1036 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 GSKIPQ9P0R6 139 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 SHPKQ9UHJ6 478 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 FRYQ5TBA9 3013 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 TRBV6-7A0A0A0MS04 114 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 ZNF850A8MQ14 1090 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 SIGLEC5O15389 551 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 FCGR3AP08637 254 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 OR5H8P0DN80 308 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 ATF4P18848 351 aaPredicted RBP17.36■□□□□ 0.37
VPS53-201ENST00000291074 SNTB1Q13884 538 aaKnown RBP17.36■□□□□ 0.37
VPS53-201ENST00000291074 PLA2G2CQ5R387 149 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 ZNF100Q8IYN0 542 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 OSR2Q8N2R0 312 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 BOLLQ8N9W6 283 aaKnown RBP17.36■□□□□ 0.37
VPS53-201ENST00000291074 RGCCQ9H4X1 137 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 SLC7A11Q9UPY5 501 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 SHANK1Q9Y566 2161 aa17.36■□□□□ 0.37
VPS53-201ENST00000291074 RAB32Q13637 225 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 C1QTNF5Q9BXJ0 243 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 ZNF391Q9UJN7 358 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 HSF4Q9ULV5 492 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 ST3GAL6Q9Y274 331 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 ZNF816-ZNF321PA0A0X1KG74 233 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms