RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PXT1Q8NFP0 134 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 OR10K1Q8NGX5 313 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 MRPS24Q96EL2 167 aaKnown RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 ARHGAP5-AS1Q96IT6 56 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 TINAGL1Q9GZM7 467 aaPredicted RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 PPA2Q9H2U2 334 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 AKAP13Q12802 2813 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 FOXI3A8MTJ6 420 aaPredicted RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 SERPINE3A8MV23 424 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 J3QW42 95 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 M0QYG6 137 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 WISP2O76076 250 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 CRYABP02511 175 aaKnown RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 IGHV1-2P23083 117 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 MPZP25189 248 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 BLVRBP30043 206 aaPredicted RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 UBE2NP61088 152 aaKnown RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 TAGLNQ01995 201 aaKnown RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 SRSF4Q08170 494 aaKnown RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 MRPL49Q13405 166 aaKnown RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 PPA1Q15181 289 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 ACSF3Q4G176 576 aaPredicted RBP13.22□□□□□ -0.29
SF3B4-201ENST00000271628 NSUN5P2Q63ZY6 315 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 LIN54Q6MZP7 749 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 TMED4Q7Z7H5 227 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 GVQW1Q8N7I0 195 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 CNEP1R1Q8N9A8 125 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 SPERTQ8NA61 448 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 GALNT11Q8NCW6 608 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 COQ8AQ8NI60 647 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 OCSTAMPQ9BR26 566 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 SSUH2Q9Y2M2 353 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 STARD10Q9Y365 291 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 IGKV1-27A0A075B6S5 117 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 A0A0D9SG52 128 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 A8MXK9 166 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 MKRN2OSH3BPM6 223 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 SSX5O60225 188 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 CA11O75493 328 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 CST4P01036 141 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 NAT1P18440 290 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 KIR2DL2P43627 348 aaPredicted RBP13.21□□□□□ -0.29
SF3B4-201ENST00000271628 PRSS12P56730 875 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 SORDQ00796 357 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 ARFRP1Q13795 201 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 LY6G6FQ5SQ64 297 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 ATPAF1Q5TC12 328 aaPredicted RBP13.21□□□□□ -0.29
SF3B4-201ENST00000271628 MDP1Q86V88 176 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 PDZD9Q8IXQ8 264 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 C9orf106Q8NAJ2 232 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 SLC30A7Q8NEW0 376 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 OR4S1Q8NGB4 309 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 BOD1Q96IK1 185 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 ZNF75AQ96N20 296 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 PLSCR4Q9NRQ2 329 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 IL36GQ9NZH8 169 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 ANAPC10Q9UM13 185 aa13.21□□□□□ -0.29
SF3B4-201ENST00000271628 ZNF850A8MQ14 1090 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 BET1O15155 118 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 HTR3BO95264 441 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 NUP62P37198 522 aaPredicted RBP13.2□□□□□ -0.3
SF3B4-201ENST00000271628 PDZK1IP1Q13113 114 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 DHRS2Q13268 280 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 TBC1D28Q2M2D7 210 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 ACTBL2Q562R1 376 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 ZNF660Q6AZW8 331 aaPredicted RBP13.2□□□□□ -0.3
SF3B4-201ENST00000271628 ZNF585AQ6P3V2 769 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 ZNF546Q86UE3 836 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 EIF4E3Q8N5X7 224 aaKnown RBP13.2□□□□□ -0.3
SF3B4-201ENST00000271628 OR56B2PQ8NGI1 322 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 OR5M8Q8NGP6 311 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 POM121Q96HA1 1249 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 Q96M66 194 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 A0A1B0GW55 424 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 SPRY1O43609 319 aaPredicted RBP13.2□□□□□ -0.3
SF3B4-201ENST00000271628 NGFP01138 241 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 IFNA6P05013 189 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 DUX4L2P0CJ85 424 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 DUX4L3P0CJ86 424 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 DUX4L4P0CJ87 422 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 DUX4L5P0CJ88 424 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 DUX4L6P0CJ89 424 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 DUX4L7P0CJ90 424 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 HLA-GP17693 338 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 CXADRP78310 365 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 GABRA6Q16445 453 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 CEACAM21Q3KPI0 293 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 INO80CQ6PI98 192 aaPredicted RBP13.2□□□□□ -0.3
SF3B4-201ENST00000271628 OVCH2Q7RTZ1 564 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 HSD17B13Q7Z5P4 300 aaPredicted RBP13.2□□□□□ -0.3
SF3B4-201ENST00000271628 CD163Q86VB7 1156 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 ZSCAN4Q8NAM6 433 aaPredicted RBP13.2□□□□□ -0.3
SF3B4-201ENST00000271628 OR13C8Q8NGS7 320 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 CXorf58Q96LI9 332 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 PAPOLGQ9BWT3 736 aaKnown RBP13.2□□□□□ -0.3
SF3B4-201ENST00000271628 PECRQ9BY49 303 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 SLC25A32Q9H2D1 315 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 DUX4Q9UBX2 424 aa13.2□□□□□ -0.3
SF3B4-201ENST00000271628 OR5H14A6NHG9 310 aa13.19□□□□□ -0.3
SF3B4-201ENST00000271628 ANGPTL7O43827 346 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms