RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZNF816Q0VGE8 651 aaPredicted RBP17.04■□□□□ 0.32
UPF1-201ENST00000262803 THSD4Q6ZMP0 1018 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 C4orf45Q96LM5 186 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 LANCL1O43813 399 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 HIST1H1DP16402 221 aaKnown RBP17.04■□□□□ 0.32
UPF1-201ENST00000262803 TMEM65Q6PI78 240 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 ZNF574Q6ZN55 896 aaPredicted RBP17.04■□□□□ 0.32
UPF1-201ENST00000262803 VN1R4Q7Z5H5 301 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 RND1Q92730 232 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 MAGT1Q9H0U3 335 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 NIT2Q9NQR4 276 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 IGHV5-51A0A0C4DH38 117 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 FAM90A27PA6NNH2 459 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 SHISA8B8ZZ34 492 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 PDCD6O75340 191 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 RAG2P55895 527 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 OR8D4Q8NGM9 314 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 MCHR2Q969V1 340 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 H0Y8G0 127 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 LSM6P62312 80 aaKnown RBP17.03■□□□□ 0.32
UPF1-201ENST00000262803 FZD5Q13467 585 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 PABPC1L2AQ5JQF8 200 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 OR10V1Q8NGI7 309 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 CT55Q8WUE5 264 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 C10orf90Q96M02 699 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 PNLIPP16233 465 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 KISS1Q15726 138 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 ZIC1Q15915 447 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 C17orf47Q8NEP4 570 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 LRRC29Q8WV35 223 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 ACY3Q96HD9 319 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 DOCK1Q14185 1865 aa17.03■□□□□ 0.32
UPF1-201ENST00000262803 CDC42EP2O14613 210 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 DUS4LO95620 317 aaKnown RBP17.02■□□□□ 0.32
UPF1-201ENST00000262803 ZNF17P17021 662 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 FMODQ06828 376 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 TMEM18Q96B42 140 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 RFPL4AA6NLU0 287 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 RFPL4AL1F8VTS6 287 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 RPP25Q9BUL9 199 aaKnown RBP17.02■□□□□ 0.32
UPF1-201ENST00000262803 SLC31A2O15432 143 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 HNF1AP20823 631 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 PTGFRP43088 359 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 CABLES2Q9BTV7 478 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 PLA2G2FQ9BZM2 168 aa17.02■□□□□ 0.32
UPF1-201ENST00000262803 NINQ8N4C6 2090 aa17.02■□□□□ 0.31
UPF1-201ENST00000262803 ADAMTS7Q9UKP4 1686 aa17.02■□□□□ 0.31
UPF1-201ENST00000262803 CDX4O14627 284 aaPredicted RBP17.02■□□□□ 0.31
UPF1-201ENST00000262803 C8orf82Q6P1X6 216 aaPredicted RBP17.02■□□□□ 0.31
UPF1-201ENST00000262803 PTP4A1Q93096 173 aa17.02■□□□□ 0.31
UPF1-201ENST00000262803 RPUSD4Q96CM3 377 aaKnown RBP17.02■□□□□ 0.31
UPF1-201ENST00000262803 DIRC2Q96SL1 478 aa17.02■□□□□ 0.31
UPF1-201ENST00000262803 WDR54Q9H977 334 aa17.02■□□□□ 0.31
UPF1-201ENST00000262803 MS4A18H0YCH9 400 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 DRD3P35462 400 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 ST3GAL2Q16842 350 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 MS4A18Q3C1V0 323 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 SPATA46Q5T0L3 261 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 C11orf87Q6NUJ2 197 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 OR5V1Q9UGF6 321 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 YBX2Q9Y2T7 364 aaKnown RBP17.01■□□□□ 0.31
UPF1-201ENST00000262803 A0A1B0GTQ1 180 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 ZNF32P17041 273 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 CEACAM6P40199 344 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 OR1L1Q8NH94 360 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 LRFN3Q9BTN0 628 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 ZNF768Q9H5H4 540 aaKnown RBP17.01■□□□□ 0.31
UPF1-201ENST00000262803 MTFP1Q9UDX5 166 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 RBP4P02753 201 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 OR2T2Q6IF00 324 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 OR6S1Q8NH40 331 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 DPF1Q92782 380 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 DUSP15Q9H1R2 295 aaPredicted RBP17.01■□□□□ 0.31
UPF1-201ENST00000262803 PLPP3O14495 311 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 CST2P09228 141 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 OR4A8P0C604 315 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 OR4S2Q8NH73 311 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 HEXA-AS1Q9H8Q6 139 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 CCL27Q9Y4X3 112 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 KCNMB2Q9Y691 235 aa17.01■□□□□ 0.31
UPF1-201ENST00000262803 TRBV5-3A0A0A0MS03 114 aa17■□□□□ 0.31
UPF1-201ENST00000262803 GPANK1O95872 356 aa17■□□□□ 0.31
UPF1-201ENST00000262803 CLLU1Q5K131 121 aa17■□□□□ 0.31
UPF1-201ENST00000262803 ACSM6Q6P461 480 aa17■□□□□ 0.31
UPF1-201ENST00000262803 TMEM88Q6PEY1 159 aa17■□□□□ 0.31
UPF1-201ENST00000262803 Q7L0L9 218 aa17■□□□□ 0.31
UPF1-201ENST00000262803 D2HGDHQ8N465 521 aa17■□□□□ 0.31
UPF1-201ENST00000262803 LOXL4Q96JB6 756 aa17■□□□□ 0.31
UPF1-201ENST00000262803 KRASP01116 189 aa17■□□□□ 0.31
UPF1-201ENST00000262803 MVDP53602 400 aa17■□□□□ 0.31
UPF1-201ENST00000262803 SURF2Q15527 256 aaPredicted RBP17■□□□□ 0.31
UPF1-201ENST00000262803 LINC00596Q86U02 117 aa17■□□□□ 0.31
UPF1-201ENST00000262803 TXNDC12O95881 172 aa17■□□□□ 0.31
UPF1-201ENST00000262803 CST4P01036 141 aa17■□□□□ 0.31
UPF1-201ENST00000262803 CDKN2AP42771 156 aaKnown RBP17■□□□□ 0.31
UPF1-201ENST00000262803 SKP2Q13309 424 aa17■□□□□ 0.31
UPF1-201ENST00000262803 FA2HQ7L5A8 372 aa17■□□□□ 0.31
UPF1-201ENST00000262803 IL13RA2Q14627 380 aa17■□□□□ 0.31
UPF1-201ENST00000262803 KNTC1P50748 2209 aa17■□□□□ 0.31
UPF1-201ENST00000262803 TMEM267Q0VDI3 215 aaPredicted RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms