RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF695Q8IW36 515 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 TMEM185AQ8NFB2 350 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 YIPF5Q969M3 257 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 TAAR3PQ9P1P4 343 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 OR2AT4A6NND4 320 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 J3QT63 122 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 SDCBPO00560 298 aaPredicted RBP10.07□□□□□ -0.8
VPS4A-201ENST00000254950 IGHG3P01860 377 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 TUBG1P23258 451 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 GK2Q14410 553 aaPredicted RBP10.07□□□□□ -0.8
VPS4A-201ENST00000254950 SLC9A3R2Q15599 337 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 GALNT11Q8NCW6 608 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 C1orf162Q8NEQ5 155 aaPredicted RBP10.07□□□□□ -0.8
VPS4A-201ENST00000254950 BCL2L2Q92843 193 aaPredicted RBP10.07□□□□□ -0.8
VPS4A-201ENST00000254950 PTX4Q96A99 478 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 TUBG2Q9NRH3 451 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 MYO15AQ9UKN7 3530 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 SHISA3A0PJX4 238 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 PDZK1IP1Q13113 114 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 ZNF79Q15937 498 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 LTC4SQ16873 150 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 MEX3BQ6ZN04 569 aaKnown RBP10.06□□□□□ -0.8
VPS4A-201ENST00000254950 NPAP1Q9NZP6 1156 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 MEIKINA0A087WXM9 373 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 LOC390937A0A1W2PQ73 354 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 OR5H8P0DN80 308 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 PRF1P14222 555 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 RPS11P62280 158 aaKnown RBP eCLIP10.06□□□□□ -0.8
VPS4A-201ENST00000254950 CD300CQ08708 224 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 RNFT1Q5M7Z0 435 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 J3QW42 95 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 GNMTQ14749 295 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 PDCD1Q15116 288 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 C6orf201Q7Z4U5 140 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 PPP1R3EQ9H7J1 279 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 ZFP57Q9NU63 452 aa10.06□□□□□ -0.8
VPS4A-201ENST00000254950 TRIM64BA6NI03 449 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 K7ENP7 123 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 GSTZ1O43708 216 aaPredicted RBP10.05□□□□□ -0.8
VPS4A-201ENST00000254950 PTAFRP25105 342 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 NKX2-5P52952 324 aaPredicted RBP10.05□□□□□ -0.8
VPS4A-201ENST00000254950 SNRPD2P62316 118 aaKnown RBP10.05□□□□□ -0.8
VPS4A-201ENST00000254950 RPS27AP62979 156 aaKnown RBP10.05□□□□□ -0.8
VPS4A-201ENST00000254950 CADM3Q8N126 398 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 ARRDC1Q8N5I2 433 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 SEC22CQ9BRL7 303 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 NDUFB7P17568 137 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 ANXA7P20073 488 aaKnown RBP10.05□□□□□ -0.8
VPS4A-201ENST00000254950 EFNB2P52799 333 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 RAP2BP61225 183 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 TNFAIP6P98066 277 aaPredicted RBP10.05□□□□□ -0.8
VPS4A-201ENST00000254950 CDK10Q15131 360 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 OR4S1Q8NGB4 309 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 OR10AD1Q8NGE0 317 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 OR10J5Q8NHC4 309 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 GRPEL2Q8TAA5 225 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 TIMD4Q96H15 378 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 ICE1Q9Y2F5 2266 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 SOCS1O15524 211 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 NGFP01138 241 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 INHBBP09529 407 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 WT1P19544 449 aaPredicted RBP10.05□□□□□ -0.8
VPS4A-201ENST00000254950 P2RY4P51582 365 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 FAM3AP98173 230 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 FCN2Q15485 313 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 ZNF2Q9BSG1 426 aaPredicted RBP10.05□□□□□ -0.8
VPS4A-201ENST00000254950 FAAP24Q9BTP7 215 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 RPL36A-HNRNPH2H7BZ11 118 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 IGHV1-2P23083 117 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 CEACAM21Q3KPI0 293 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 TIMM23BQ5SRD1 257 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 C1orf123Q9NWV4 160 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 ERRFI1Q9UJM3 462 aaPredicted RBP10.05□□□□□ -0.8
VPS4A-201ENST00000254950 ITGB1BP2Q9UKP3 347 aa10.05□□□□□ -0.8
VPS4A-201ENST00000254950 ROS1P08922 2347 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 HOXB5P09067 269 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 GABRA6Q16445 453 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 SWI5Q1ZZU3 235 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 EIF5AL1Q6IS14 154 aaKnown RBP10.04□□□□□ -0.8
VPS4A-201ENST00000254950 IGFL3Q6UXB1 125 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 RFPL4BQ6ZWI9 263 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 OR10S1Q8NGN2 331 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 LRRC29Q8WV35 223 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 H1FXQ92522 213 aaKnown RBP10.04□□□□□ -0.8
VPS4A-201ENST00000254950 S100PBPQ96BU1 408 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 TINAGL1Q9GZM7 467 aaPredicted RBP10.04□□□□□ -0.8
VPS4A-201ENST00000254950 TUBAL3A6NHL2 446 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 M0R233 179 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 CDIPTO14735 213 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 AKR7A2O43488 359 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 RGS11O94810 467 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 TRAPPC2P0DI81 140 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 TRAPPC2BP0DI82 140 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 ARHGDIBP52566 201 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 CATR1Q13166 79 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 LINC00303Q3SY05 128 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 CD276Q5ZPR3 534 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 OR52W1Q6IF63 320 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 UNQ6494/PRO21346Q6UXR6 183 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 ZNF649Q9BS31 505 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms