RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 NPRL2Q8WTW4 380 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 GATAD2BQ8WXI9 593 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 BORCS8Q96FH0 119 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 TMPRSS13Q9BYE2 586 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 DNTTIP1Q9H147 329 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 INSIG2Q9Y5U4 225 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 MYF6P23409 242 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 ATPAF1Q5TC12 328 aaPredicted RBP17.24■□□□□ 0.35
CLN3-240ENST00000631023 DNAAF1Q8NEP3 725 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 OR5T2Q8NGG2 359 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 RAB40AQ8WXH6 277 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 ANKRD60Q9BZ19 345 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 PKIBQ9C010 78 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 NEK6Q9HC98 313 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 NLKQ9UBE8 527 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 CTSZQ9UBR2 303 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 DHDHQ9UQ10 334 aa17.24■□□□□ 0.35
CLN3-240ENST00000631023 LOC105371242A0A075B767 164 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 MYL12BO14950 172 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 ATF1P18846 271 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 MPZP25189 248 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 C21orf33P30042 268 aaPredicted RBP17.23■□□□□ 0.35
CLN3-240ENST00000631023 RBP2P50120 134 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 ATP1B3P54709 279 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 CDK5R1Q15078 307 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 C11orf91Q3C1V1 193 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 STUMQ69YW2 141 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 ANGPTL5Q86XS5 388 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 SERPINA12Q8IW75 414 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 POC1AQ8NBT0 407 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 OR5D14Q8NGL3 314 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 TSEN15Q8WW01 171 aaKnown RBP17.23■□□□□ 0.35
CLN3-240ENST00000631023 MYDGFQ969H8 173 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 SEH1LQ96EE3 360 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 CCL13Q99616 98 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 MRI1Q9BV20 369 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 SNTG1Q9NSN8 517 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 FKBP14Q9NWM8 211 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 NKX6-3A6NJ46 265 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 OR2AT4A6NND4 320 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 PTGES3LE9PB15 166 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 DVL1O14640 695 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 OGG1O15527 345 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 NOS1APO75052 506 aaPredicted RBP17.23■□□□□ 0.35
CLN3-240ENST00000631023 ACAA1P09110 424 aaPredicted RBP17.23■□□□□ 0.35
CLN3-240ENST00000631023 PGA5P0DJD9 388 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 VHLP40337 213 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 IL24Q13007 206 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 SCGB2A2Q13296 93 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 SMIM21Q3B7S5 101 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 CALHM1Q8IU99 346 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 SPSB1Q96BD6 273 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 MED30Q96HR3 178 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 ERGIC3Q9Y282 383 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 TPRKBQ9Y3C4 175 aa17.23■□□□□ 0.35
CLN3-240ENST00000631023 IGHV2-70DA0A0C4DH43 119 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 SLC1A7O00341 560 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 SYNGR1O43759 233 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 TAS2R43P59537 309 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 KRTAP21-3Q3LHN1 58 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 XAF1Q6GPH4 301 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 PARP16Q8N5Y8 322 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 NANPQ8TBE9 248 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 RPS4Y2Q8TD47 263 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 GPR148Q8TDV2 347 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 SMIM19Q96E16 107 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 RASSF4Q9H2L5 321 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 ZCCHC4Q9H5U6 513 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 AUP1Q9Y679 476 aa17.22■□□□□ 0.35
CLN3-240ENST00000631023 KIR2DS1A0A191URI9 304 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 NDUFB3O43676 98 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 NXPH2O95156 264 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 ECDO95905 644 aaPredicted RBP17.21■□□□□ 0.35
CLN3-240ENST00000631023 CYB5AP00167 134 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 AVPP01185 164 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 CDK1P06493 297 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 CD2P06729 351 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 LIPFP07098 398 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 AZGP1P25311 298 aaKnown RBP17.21■□□□□ 0.35
CLN3-240ENST00000631023 MTCP1P56278 107 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 PAX2Q02962 417 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 LRRC10Q5BKY1 277 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 ACP7Q6ZNF0 438 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 LHFPL2Q6ZUX7 228 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 PRIMA1Q86XR5 153 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 ANGPTL6Q8NI99 470 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 OPALINQ96PE5 141 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 NUDT16L1Q9BRJ7 211 aaKnown RBP17.21■□□□□ 0.35
CLN3-240ENST00000631023 METRNQ9UJH8 293 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 RAB26Q9ULW5 256 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 ZNF281Q9Y2X9 895 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 PCDHGB5Q9Y5G0 923 aa17.21■□□□□ 0.35
CLN3-240ENST00000631023 IGKV1-9A0A0C4DH69 117 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 GPR37O15354 613 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 ENSAO43768 121 aaKnown RBP17.2■□□□□ 0.34
CLN3-240ENST00000631023 MT-ND2P03891 347 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 GABRA2P47869 451 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 WNT4P56705 351 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 IL13RA1P78552 427 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 PAX8Q06710 450 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms