RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TAS2R4Q9NYW5 299 aa11.23□□□□□ -0.61
LINC00540-202ENST00000616974 IGKV1D-17A0A075B6S4 117 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 TRAV8-7A0A075B6U6 113 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 MEX3AA1L020 520 aaKnown RBP11.22□□□□□ -0.61
LINC00540-202ENST00000616974 DHRS7CA6NNS2 312 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 C22orf46C9J442 243 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 LGALS8O00214 317 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 CCDC159P0C7I6 412 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 AZGP1P25311 298 aaKnown RBP11.22□□□□□ -0.61
LINC00540-202ENST00000616974 GZMKP49863 264 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 DLX1P56177 255 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 PRB3Q04118 309 aaPredicted RBP11.22□□□□□ -0.61
LINC00540-202ENST00000616974 CR1LQ2VPA4 569 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 TMEM155Q4W5P6 130 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 ZBTB37Q5TC79 503 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 C1QL2Q7Z5L3 287 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 TMEM106AQ96A25 262 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 CDCA4Q9BXL8 241 aa11.22□□□□□ -0.61
LINC00540-202ENST00000616974 OR5B21A6NL26 309 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 TMEM210A6NLX4 147 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 B4DSR2 109 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 TMPRSS2O15393 492 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 PIN1P1O15428 100 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 ADAM20O43506 726 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 ZNF20P17024 532 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 HSPA13P48723 471 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 POU3F4P49335 361 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 GP2P55259 537 aaKnown RBP11.21□□□□□ -0.61
LINC00540-202ENST00000616974 MED22Q15528 200 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 SNCBQ16143 134 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 FAM120AOSQ5T036 256 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 TEX36Q5VZQ5 186 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 FAM166AQ6J272 317 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 C1orf87Q8N0U7 546 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 HPS1Q92902 700 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 TMEM186Q96B77 213 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 TRIM36Q9NQ86 728 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 RBFOX1Q9NWB1 397 aaKnown RBP11.21□□□□□ -0.61
LINC00540-202ENST00000616974 DHDHQ9UQ10 334 aa11.21□□□□□ -0.61
LINC00540-202ENST00000616974 NOP16Q9Y3C1 178 aaKnown RBP11.21□□□□□ -0.61
LINC00540-202ENST00000616974 IRGMA1A4Y4 181 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 DENRO43583 198 aaKnown RBP11.21□□□□□ -0.62
LINC00540-202ENST00000616974 OCM2P0CE71 109 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 GLRA1P23415 457 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 SNU13P55769 128 aaKnown RBP11.21□□□□□ -0.62
LINC00540-202ENST00000616974 PAX2Q02962 417 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 IKZF1Q13422 519 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 LIPKQ5VXJ0 399 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 FAHD2BQ6P2I3 314 aaPredicted RBP11.21□□□□□ -0.62
LINC00540-202ENST00000616974 SLC25A26Q70HW3 274 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 SPICQ8N5J4 248 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 ZNRF1Q8ND25 227 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 FAHD2AQ96GK7 314 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 COMMD4Q9H0A8 199 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 CHCHD3Q9NX63 227 aaKnown RBP11.21□□□□□ -0.62
LINC00540-202ENST00000616974 SCN3BQ9NY72 215 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 ZNF581Q9P0T4 197 aa11.21□□□□□ -0.62
LINC00540-202ENST00000616974 LOC105371242A0A075B767 164 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 RGS10O43665 173 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 RPSAP08865 295 aaKnown RBP11.2□□□□□ -0.62
LINC00540-202ENST00000616974 HSMCR30P0CW71 290 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 PGA5P0DJD9 388 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 PSG2P11465 335 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 ATF1P18846 271 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 DUSP1P28562 367 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 CFHR2P36980 270 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 DGUOKQ16854 277 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 CCDC58Q4VC31 144 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 WDR25Q64LD2 544 aaPredicted RBP11.2□□□□□ -0.62
LINC00540-202ENST00000616974 STUMQ69YW2 141 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 DCDC5Q6ZRR9 648 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 PRIMA1Q86XR5 153 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 PARP16Q8N5Y8 322 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 CD177Q8N6Q3 437 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 OR52N4Q8NGI2 321 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 TMEM203Q969S6 136 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 DACT3Q96B18 629 aaPredicted RBP11.2□□□□□ -0.62
LINC00540-202ENST00000616974 TMED9Q9BVK6 235 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 TMPRSS13Q9BYE2 586 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 ERGIC3Q9Y282 383 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 ZNF281Q9Y2X9 895 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 MAB21L2Q9Y586 359 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 SOX21Q9Y651 276 aaPredicted RBP11.2□□□□□ -0.62
LINC00540-202ENST00000616974 TRBV5-5A0A0J9YX44 114 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 J3QT63 122 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 BCL3P20749 454 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 EEF1B2P24534 225 aaKnown RBP11.2□□□□□ -0.62
LINC00540-202ENST00000616974 MPZP25189 248 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 PITPNBP48739 271 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 MTCP1P56278 107 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 SPHARQ15513 63 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 ACP7Q6ZNF0 438 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 UTS2BQ765I0 119 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 ANGPTL6Q8NI99 470 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 PP6455Q8WZ26 134 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 MYDGFQ969H8 173 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 BORCS8Q96FH0 119 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 MRPL48Q96GC5 212 aaKnown RBP11.2□□□□□ -0.62
LINC00540-202ENST00000616974 OPALINQ96PE5 141 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 TECTBQ96PL2 329 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms