RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CATSPERDQ86XM0 798 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 GJD3Q8N144 294 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 RFLNBQ8N5W9 214 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 OR4D5Q8NGN0 318 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 CPT1CQ8TCG5 803 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ELSPBP1Q96BH3 223 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ZG16BQ96DA0 208 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 CABLES2Q9BTV7 478 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 SLCO5A1Q9H2Y9 848 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 TMEM74BQ9NUR3 256 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 OBP2AQ9NY56 170 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 MSRAQ9UJ68 235 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 IKZF2Q9UKS7 526 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 HSF4Q9ULV5 492 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 RNF115Q9Y4L5 304 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ETV2O00321 342 aaPredicted RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 KLF4O43474 513 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 EPPINO95925 133 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 POU2F2P09086 479 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 PVRP15151 417 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ZNF28P17035 718 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 PPP1CCP36873 323 aaKnown RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 BUD31P41223 144 aaPredicted RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 LSSP48449 732 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ARRB1P49407 418 aaPredicted RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 ENDOGQ14249 297 aaKnown RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 TMEM92Q6UXU6 159 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 TEX43Q6ZNM6 134 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ZNF679Q8IYX0 411 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ADAD2Q8NCV1 583 aaKnown RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 OR5P2Q8WZ92 322 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 BCL2L2Q92843 193 aaPredicted RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 CTHRC1Q96CG8 243 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 MS4A10Q96PG2 267 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ZNF107Q9UII5 783 aaPredicted RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 SLC7A7Q9UM01 511 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 MRPS18BQ9Y676 258 aaKnown RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 VPS13AQ96RL7 3174 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 A0A1B0GV50 99 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 CPSF4LA6NMK7 179 aaKnown RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 OR6A2O95222 327 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 CHRM2P08172 466 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 CSRP1P21291 193 aaKnown RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 RPL12P30050 165 aaKnown RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 ZNF41P51814 821 aaPredicted RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 HLA-DRB3P79483 266 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 FOXF1Q12946 379 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 TOMM20LQ6UXN7 152 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 NRMQ8IXM6 262 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 CNRIP1Q96F85 164 aaPredicted RBP9.04□□□□□ -0.96
VPS39-214ENST00000614932 SLC35G5Q96KT7 338 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 NMNAT2Q9BZQ4 307 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 RAB18Q9NP72 206 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 PLSCR4Q9NRQ2 329 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ZNF319Q9P2F9 582 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 SLC17A4Q9Y2C5 497 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 HEATR5AQ86XA9 2040 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 A0A0A6YYD5 115 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 AQP7P3A6NL99 342 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 GPR89AB7ZAQ6 455 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 IFNL4K9M1U5 179 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 HMGN2P05204 90 aaKnown RBP9.03□□□□□ -0.96
VPS39-214ENST00000614932 CELA2BP08218 269 aaPredicted RBP9.03□□□□□ -0.96
VPS39-214ENST00000614932 ZGLP1P0C6A0 271 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 GPR89BP0CG08 455 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 IL9P15248 144 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 BMP5P22003 454 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 FCGR2CP31995 323 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 PSMB10P40306 273 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 DECR1Q16698 335 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 TDRG1Q3Y452 100 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 SLC22A6Q4U2R8 563 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 FAM219AQ8IW50 185 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 FAM89BQ8N5H3 189 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 DEFB119Q8N690 84 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 OR52L1Q8NGH7 329 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 SUN3Q8TAQ9 357 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 CD180Q99467 661 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 VAMP8Q9BV40 100 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 STARD5Q9NSY2 213 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 LYRM2Q9NU23 88 aaPredicted RBP9.03□□□□□ -0.96
VPS39-214ENST00000614932 PAM16Q9Y3D7 125 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 MDC1Q14676 2089 aaKnown RBP9.03□□□□□ -0.96
VPS39-214ENST00000614932 SERPINE3A8MV23 424 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 HIST1H1TP22492 207 aaPredicted RBP9.03□□□□□ -0.96
VPS39-214ENST00000614932 S100A10P60903 97 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 C1orf61Q13536 156 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 CNN3Q15417 329 aaKnown RBP9.03□□□□□ -0.96
VPS39-214ENST00000614932 PRSS8Q16651 343 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 DEFB134Q4QY38 66 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 PRR27Q6MZM9 219 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 EXD3Q8N9H8 876 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 APCDD1LQ8NCL9 501 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 OR51D1Q8NGF3 324 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 TMEM170AQ8WVE7 144 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 LPAR4Q99677 370 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 ABHD14AQ9BUJ0 271 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 SMIM3Q9BZL3 60 aa9.03□□□□□ -0.96
VPS39-214ENST00000614932 OR52D1Q9H346 318 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms