RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SPSB1Q96BD6 273 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 SEH1LQ96EE3 360 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 OPALINQ96PE5 141 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 WDR13Q9H1Z4 485 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 LPAR2Q9HBW0 351 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 SONP18583 2426 aaKnown RBP13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 NSD1Q96L73 2696 aaPredicted RBP13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 IGHV3OR15-7A0A075B7D8 119 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 SULT1B1O43704 296 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 ALX3O95076 343 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 MSMBP08118 114 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 RPS2P15880 293 aaKnown RBP13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 CPT2P23786 658 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 MAP2K4P45985 399 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 GMFBP60983 142 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 SEC61A1P61619 476 aaKnown RBP13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 MICBQ29980 383 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 Q499Y3 187 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 FAM166AQ6J272 317 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 LYPD2Q6UXB3 125 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 TSPAN14Q8NG11 270 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 PKIBQ9C010 78 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 YAE1D1Q9NRH1 226 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 MIOXQ9UGB7 285 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 POLDIP2Q9Y2S7 368 aa13.82□□□□□ -0.2
CCDC28A-202ENST00000611852 GYPAP02724 150 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 OCMP0CE72 109 aaPredicted RBP13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 PGA5P0DJD9 388 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 SMIM18P0DKX4 95 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 GLRA1P23415 457 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 ATP1B3P54709 279 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 MTCP1P56278 107 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 IL24Q13007 206 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 TBCEQ15813 527 aaPredicted RBP13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 ZNF529Q6P280 563 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 LHFPL2Q6ZUX7 228 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 POC1AQ8NBT0 407 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 OR51F2Q8NH61 342 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 C12orf43Q96C57 262 aaKnown RBP13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 ZNF488Q96MN9 340 aa13.81□□□□□ -0.2
CCDC28A-202ENST00000611852 A8MV72 311 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 NDUFA2O43678 99 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 MRPS14O60783 128 aaKnown RBP13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 NOS1APO75052 506 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 ACAA1P09110 424 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 ZFP36P26651 326 aaKnown RBP13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 NLRC3Q7RTR2 1065 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 NEIL1Q96FI4 390 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 SPACA5Q96QH8 159 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 OR14A2Q96R54 314 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 NRIP2Q9BQI9 281 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 SNTG1Q9NSN8 517 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 TAS2R4Q9NYW5 299 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 DNAJB11Q9UBS4 358 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 FN1P02751 2386 aaKnown RBP13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 A0A087WXM4 84 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 ZNF879B4DU55 563 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 PLATP00750 562 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 HSMCR30P0CW71 290 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 RAB3AP20336 220 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 DVL1P1P54792 670 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 LCN2P80188 198 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 EMX1Q04741 257 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 GPR50Q13585 617 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 ESCO2Q56NI9 601 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 STUMQ69YW2 141 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 CRIP3Q6Q6R5 217 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 ZNF841Q6ZN19 808 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 SLC25A26Q70HW3 274 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 RNF144BQ7Z419 303 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 OR5T2Q8NGG2 359 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 OR8B3Q8NGG8 313 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 OR51A2Q8NGJ7 313 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 TMEM186Q96B77 213 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 TMIGD2Q96BF3 282 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 ORAI1Q96D31 301 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 OR8B2Q96RD0 313 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 NEK6Q9HC98 313 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 ISYNA1Q9NPH2 558 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 ACOT13Q9NPJ3 140 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 RASL12Q9NYN1 266 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 MTCH1Q9NZJ7 389 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 NLKQ9UBE8 527 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 KAAG1Q9UBP8 84 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 CTSZQ9UBR2 303 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 KCNS2Q9ULS6 477 aa13.8□□□□□ -0.2
CCDC28A-202ENST00000611852 ARHGAP32A7KAX9 2087 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 DOCK11Q5JSL3 2073 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 TRBV5-7A0A0A0MS05 114 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 KIAA1324LA8MWY0 1029 aaPredicted RBP13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 A8MXK9 166 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 ADAM20O43506 726 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 FOXH1O75593 365 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 HCKP08631 526 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 AMY2BP19961 511 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 PITPNBP48739 271 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 ERVK11-1P61568 191 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 MLLT11Q13015 90 aaPredicted RBP13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 TPBGQ13641 420 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 LIPKQ5VXJ0 399 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 147.6 ms