RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 C14orf177Q52M58 125 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 CPTPQ5TA50 214 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 KHDRBS2Q5VWX1 349 aaKnown RBP3.41□□□□□ -1.86
LINC00540-201ENST00000611481 UNQ6126/PRO20091Q6UXV3 157 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 LRP11Q86VZ4 500 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 TMEM17Q86X19 198 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 VRK2Q86Y07 508 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 FAM89BQ8N5H3 189 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 OR4C13Q8NGP0 309 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 OR13C3Q8NGS6 347 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 NDNFQ8TB73 568 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 LRRC20Q8TCA0 184 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 CD300LFQ8TDQ1 290 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 SECTM1Q8WVN6 248 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 C17orf50Q8WW18 174 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 CCL17Q92583 94 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 CCDC126Q96EE4 140 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 TRNT1Q96Q11 434 aaKnown RBP3.41□□□□□ -1.86
LINC00540-201ENST00000611481 ELOVL6Q9H5J4 265 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 EGLN3Q9H6Z9 239 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 PARVBQ9HBI1 364 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 LYARQ9NX58 379 aaKnown RBP3.41□□□□□ -1.86
LINC00540-201ENST00000611481 MTCH1Q9NZJ7 389 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 STX18Q9P2W9 335 aaKnown RBP3.41□□□□□ -1.86
LINC00540-201ENST00000611481 ELF5Q9UKW6 265 aaPredicted RBP3.41□□□□□ -1.86
LINC00540-201ENST00000611481 POLDIP2Q9Y2S7 368 aa3.41□□□□□ -1.86
LINC00540-201ENST00000611481 FAT2Q9NYQ8 4349 aa3.4□□□□□ -1.86
LINC00540-201ENST00000611481 MYCBP2O75592 4640 aa3.4□□□□□ -1.86
LINC00540-201ENST00000611481 IGHV2-70DA0A0C4DH43 119 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 A0A1W2PPE3 182 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 HACD1B0YJ81 288 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 NR5A2O00482 541 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 MRPL33O75394 65 aaKnown RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 CLIC3O95833 236 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 OPN1SWP03999 348 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 THY1P04216 161 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 IGF1P05019 195 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 UMPSP11172 480 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 EFNA1P20827 205 aaPredicted RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 CA6P23280 308 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 GPR4P46093 362 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 ATP1B3P54709 279 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 PLP1P60201 277 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 UBE2NP61088 152 aaKnown RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 FGF12P61328 243 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 HERV-K104P61576 105 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 CRADDP78560 199 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 MRPS22P82650 360 aaKnown RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 EWSR1Q01844 656 aaKnown RBP eCLIP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 PAX5Q02548 391 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 TFDP2Q14188 446 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 GK3PQ14409 553 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 ATXN7L3Q14CW9 347 aaPredicted RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 TAF13Q15543 124 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 HAGHQ16775 308 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 BEND6Q5SZJ8 279 aaPredicted RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 AP1ARQ63HQ0 302 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 OR4C11Q6IEV9 310 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 Q6ZRG5 221 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 UTS2BQ765I0 119 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF571Q7Z3V5 609 aaPredicted RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 DHDDSQ86SQ9 333 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 MOB3BQ86TA1 216 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 THOC6Q86W42 341 aaKnown RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 OR52R1Q8NGF1 315 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 MARCH1Q8TCQ1 289 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 NEURL3Q96EH8 262 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 PPP1R2P1Q96PQ5 205 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 LRRC1Q9BTT6 524 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 TRIM15Q9C019 465 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 ALG9Q9H6U8 611 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 RANBP3Q9H6Z4 567 aaPredicted RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 PATZ1Q9HBE1 687 aaKnown RBP3.4□□□□□ -1.87
LINC00540-201ENST00000611481 NOX3Q9HBY0 568 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 MAN2C1Q9NTJ4 1040 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 MS4A12Q9NXJ0 267 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 AHSPQ9NZD4 102 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 EMC3Q9P0I2 261 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 DNAH2Q9P225 4427 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 SLC7A8Q9UHI5 535 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 PHF11Q9UIL8 331 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 TCF19Q9Y242 345 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 SLC22A14Q9Y267 594 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 RASD1Q9Y272 281 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 MAD1L1Q9Y6D9 718 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 SMAD5-AS1Q9Y6J3 95 aa3.4□□□□□ -1.87
LINC00540-201ENST00000611481 IGLV3-32A0A0A0MS00 114 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 CENPVL3A0A0U1RRI6 287 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 NKX6-3A6NJ46 265 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 GJE1A6NN92 205 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 GOLGA8KD6RF30 607 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 EFNA2O43921 213 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 SCELO95171 688 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 TTC4O95801 387 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 ANGPTL1O95841 491 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 IGLV1-44P01699 117 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 C8GP07360 202 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 H2BFMP0C1H6 154 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 FRMD6-AS1P0C7T7 363 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 C1GALT1C1LP0DN25 315 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms