RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 CHCHD3Q9NX63 227 aaKnown RBP14.01□□□□□ -0.17
TRIM28-215ENST00000601150 RASL12Q9NYN1 266 aa14.01□□□□□ -0.17
TRIM28-215ENST00000601150 CNOT2Q9NZN8 540 aaKnown RBP14.01□□□□□ -0.17
TRIM28-215ENST00000601150 AUP1Q9Y679 476 aa14.01□□□□□ -0.17
TRIM28-215ENST00000601150 TRBV2A0A0J9YWF9 115 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 KIR2DS1A0A191URI9 304 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 NKX6-3A6NJ46 265 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 SYNGR1O43759 233 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 ZFPL1O95159 310 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 ADRA2CP18825 462 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 MPZP25189 248 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 PAX8Q06710 450 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 ST3GAL4Q11206 333 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 OR2G6Q5TZ20 316 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 UTS2BQ765I0 119 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 ANGPTL5Q86XS5 388 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 OR51A4Q8NGJ6 313 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 NUDT16L1Q9BRJ7 211 aaKnown RBP14□□□□□ -0.17
TRIM28-215ENST00000601150 PKIBQ9C010 78 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 NLKQ9UBE8 527 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 PSORS1C1Q9UIG5 152 aa14□□□□□ -0.17
TRIM28-215ENST00000601150 A0A1B0GW55 424 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 OR2AT4A6NND4 320 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 C22orf46C9J442 243 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 ENSAO43768 121 aaKnown RBP13.99□□□□□ -0.17
TRIM28-215ENST00000601150 XPNPEP2O43895 674 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 NOS1APO75052 506 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-215ENST00000601150 DUX4L2P0CJ85 424 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 DUX4L3P0CJ86 424 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 DUX4L4P0CJ87 422 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 DUX4L5P0CJ88 424 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 DUX4L6P0CJ89 424 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 DUX4L7P0CJ90 424 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 PGA5P0DJD9 388 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 ATF1P18846 271 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 AMY2BP19961 511 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 GTF2A1P52655 376 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-215ENST00000601150 IL24Q13007 206 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 SMIM21Q3B7S5 101 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 C11orf91Q3C1V1 193 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 CCDC58Q4VC31 144 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 RPL22L1Q6P5R6 122 aaKnown RBP13.99□□□□□ -0.17
TRIM28-215ENST00000601150 DUX4L9Q6RFH8 374 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-215ENST00000601150 CALHM1Q8IU99 346 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 FAM216BQ8N7L0 139 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 DNAAF1Q8NEP3 725 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 BPIFB6Q8NFQ5 453 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 OR52N1Q8NH53 320 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 ANGPTL6Q8NI99 470 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 ST8SIA4Q92187 359 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 BORCS8Q96FH0 119 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 MED30Q96HR3 178 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 ZNF488Q96MN9 340 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 DUX4Q9UBX2 424 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 CLEC2DQ9UHP7 191 aa13.99□□□□□ -0.17
TRIM28-215ENST00000601150 IGKV1-27A0A075B6S5 117 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 NDUFB3O43676 98 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 FCN3O75636 299 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 ECDO95905 644 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-215ENST00000601150 FSHBP01225 129 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 ACAA1P09110 424 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-215ENST00000601150 EPHA1P21709 976 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 PRKACBP22694 351 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 IL13RA1P78552 427 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 RIPK1Q13546 671 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 LRRC10Q5BKY1 277 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 ARMCX4Q5H9R4 360 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 ACP7Q6ZNF0 438 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 ZNF788Q6ZQV5 615 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 AHSA2Q719I0 299 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 STX19Q8N4C7 294 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 RPS4Y2Q8TD47 263 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 SPSB1Q96BD6 273 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 PDCD1LG2Q9BQ51 273 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 NRIP2Q9BQI9 281 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 BABAM2Q9NXR7 383 aa13.98□□□□□ -0.17
TRIM28-215ENST00000601150 IGKV1-9A0A0C4DH69 117 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 GPR37O15354 613 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 NXPH2O95156 264 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 ATP6V1G2O95670 118 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 LIPFP07098 398 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 OCM2P0CE71 109 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 OCMP0CE72 109 aaPredicted RBP13.97□□□□□ -0.17
TRIM28-215ENST00000601150 PPIAL4GP0DN37 164 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 PSG2P11465 335 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 AZGP1P25311 298 aaKnown RBP13.97□□□□□ -0.17
TRIM28-215ENST00000601150 GABRA2P47869 451 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 RBP2P50120 134 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 ATP1B3P54709 279 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 IKZF1Q13422 519 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 CDK5R1Q15078 307 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 XAF1Q6GPH4 301 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 BTN2A1Q7KYR7 527 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 PNLDC1Q8NA58 520 aaKnown RBP13.97□□□□□ -0.17
TRIM28-215ENST00000601150 TSEN15Q8WW01 171 aaKnown RBP13.97□□□□□ -0.17
TRIM28-215ENST00000601150 GAFA1Q96PS6 74 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 ZCCHC4Q9H5U6 513 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 NEK6Q9HC98 313 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 ZNF222Q9UK12 451 aa13.97□□□□□ -0.17
TRIM28-215ENST00000601150 DHDHQ9UQ10 334 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms