RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 IFITM5A6NNB3 132 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 AIPO00170 330 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 SYNGR1O43759 233 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 NOS1APO75052 506 aaPredicted RBP12.11□□□□□ -0.47
UPF1-211ENST00000600868 TMEM127O75204 238 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 CYB5AP00167 134 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 TMEM225BP0DP42 221 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 DNASE1P24855 282 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 OR3A4PP47883 348 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 POU3F4P49335 361 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 FOXB2Q5VYV0 432 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 ASCL4Q6XD76 172 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 SLC25A26Q70HW3 274 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 OR4D6Q8NGJ1 314 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 OR5D18Q8NGL1 313 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 OR11L1Q8NGX0 322 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 OR51F2Q8NH61 342 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 TNFAIP8L1Q8WVP5 186 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 RDH5Q92781 318 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 HPS1Q92902 700 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 NINJ1Q92982 152 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 SLC25A46Q96AG3 418 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 LURAP1Q96LR2 239 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 NKX3-1Q99801 234 aaPredicted RBP12.11□□□□□ -0.47
UPF1-211ENST00000600868 GSX2Q9BZM3 304 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 PLGRKTQ9HBL7 147 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 DLL4Q9NR61 685 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 BEX4Q9NWD9 120 aaPredicted RBP12.11□□□□□ -0.47
UPF1-211ENST00000600868 C1orf123Q9NWV4 160 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 UNC79Q9P2D8 2635 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 hCG_1807616A0A1W2PRN6 198 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 SMIM30A4D0T7 59 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 LRRC30A6NM36 301 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 SPRY1O43609 319 aaPredicted RBP12.1□□□□□ -0.47
UPF1-211ENST00000600868 NDUFS7O75251 213 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 RHBDL1O75783 438 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 PLATP00750 562 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 LHBP01229 141 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 IGHV4-39P01824 125 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 PGA5P0DJD9 388 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 DAOP14920 347 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 COL8A2P25067 703 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 HTR2CP28335 458 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 CAV3P56539 151 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 RAB11BQ15907 218 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 HFEQ30201 348 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 SFXN4Q6P4A7 337 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 ZNF826PQ6ZT77 177 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 C1QL2Q7Z5L3 287 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 TBC1D15Q8TC07 691 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 YIPF5Q969M3 257 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 SLC25A28Q96A46 364 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 MBD6Q96DN6 1003 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 BARX1Q9HBU1 254 aaPredicted RBP12.1□□□□□ -0.47
UPF1-211ENST00000600868 MTCH1Q9NZJ7 389 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 RNF7Q9UBF6 113 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 GHRLQ9UBU3 117 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 MRPS28Q9Y2Q9 187 aaKnown RBP12.1□□□□□ -0.47
UPF1-211ENST00000600868 DYSFO75923 2080 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 SPG11Q96JI7 2443 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 TANC2Q9HCD6 1990 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 USF3Q68DE3 2245 aa12.1□□□□□ -0.47
UPF1-211ENST00000600868 ABCA12Q86UK0 2595 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 IGKV1-12A0A0C4DH73 117 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 ANGPTL7O43827 346 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 CDC14BO60729 498 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 RP2O75695 350 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 LY6HO94772 140 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 KDM4BO94953 1096 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 IGKV1D-12P01611 117 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 UBBP0CG47 229 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 IRF2P14316 349 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 PTH2RP49190 550 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 RORCP51449 518 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 CAPZA1P52907 286 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 ATP5J2P56134 94 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 HNRNPA0Q13151 305 aaKnown RBP12.09□□□□□ -0.47
UPF1-211ENST00000600868 HES5Q5TA89 166 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 AWAT2Q6E213 333 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 TGIF2LYQ8IUE0 185 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 Q8IYB0 196 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 C1orf87Q8N0U7 546 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 POC1AQ8NBT0 407 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 Q8NFD4 153 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 LRRC29Q8WV35 223 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 CCL17Q92583 94 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 SLAMF9Q96A28 289 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 S100A13Q99584 98 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 NRIP2Q9BQI9 281 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 RHOFQ9HBH0 211 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 SMURF1Q9HCE7 757 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 MYOZ1Q9NP98 299 aaPredicted RBP12.09□□□□□ -0.47
UPF1-211ENST00000600868 TMEM106BQ9NUM4 274 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 TREM2Q9NZC2 230 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 IL36GQ9NZH8 169 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 STEAP1Q9UHE8 339 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 CACNG2Q9Y698 323 aa12.09□□□□□ -0.47
UPF1-211ENST00000600868 SRRM5B3KS81 715 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 TRAPPC2LH3BP13 241 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 TMEM178BH3BS89 294 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms