RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SPACA5Q96QH8 159 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 C20orf27Q9GZN8 174 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 DNAJB12Q9NXW2 375 aaKnown RBP18.21■□□□□ 0.51
UPF1-207ENST00000599848 OOEPA6NGQ2 149 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 PCOLCE2Q9UKZ9 415 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 MYH7P12883 1935 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 TFAP2AP05549 437 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 HRH1P35367 487 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 CDK5Q00535 292 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 RBPMS2Q6ZRY4 209 aaKnown RBP18.2■□□□□ 0.5
UPF1-207ENST00000599848 NFAM1Q8NET5 270 aaPredicted RBP18.2■□□□□ 0.5
UPF1-207ENST00000599848 HGDQ93099 445 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 TMEM30AQ9NV96 361 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 ZBTB37Q5TC79 503 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 TGIF2LYQ8IUE0 185 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 TGIF2LXQ8IUE1 241 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 COL19A1Q14993 1142 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 GPR32P1Q8NGA4 272 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 TMPRSS2O15393 492 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 CCR6P51684 374 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 KISS1Q15726 138 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 TNXAQ16473 311 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 TEX37Q96LM6 180 aa18.2■□□□□ 0.5
UPF1-207ENST00000599848 ATXN7O15265 892 aaPredicted RBP18.19■□□□□ 0.5
UPF1-207ENST00000599848 HOXB1P14653 301 aaPredicted RBP18.19■□□□□ 0.5
UPF1-207ENST00000599848 AREGP15514 252 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 FBXW9Q5XUX1 488 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 LCN15Q6UWW0 184 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 UBE3DQ7Z6J8 389 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 CHST2Q9Y4C5 530 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 RGPD2P0DJD1 1756 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 MLF1P58340 268 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 TMUB2Q71RG4 321 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 LINC00596Q86U02 117 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 Q8WTZ3 238 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 GNG7O60262 68 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 CDC20Q12834 499 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 GABRA6Q16445 453 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 DUSP18Q8NEJ0 188 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 A0A1W2PR80 420 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 H0Y8G0 127 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 RAB9AP51151 201 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 TMEM128Q5BJH2 165 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 ZNF586Q9NXT0 402 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 C7orf72A4D263 438 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 NDUFA2O43678 99 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 FCN2Q15485 313 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 RHOUQ7L0Q8 258 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 LILRB1Q8NHL6 650 aaPredicted RBP18.19■□□□□ 0.5
UPF1-207ENST00000599848 MZB1Q8WU39 189 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 NUDT8Q8WV74 236 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 C11orf54Q9H0W9 315 aaPredicted RBP18.19■□□□□ 0.5
UPF1-207ENST00000599848 GHITMQ9H3K2 345 aa18.19■□□□□ 0.5
UPF1-207ENST00000599848 C3orf80F5H4A9 247 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 PLPP3O14495 311 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 RAB5AP20339 215 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 MAGEB1P43366 347 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 STARD6P59095 220 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 Q3ZCU0 254 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 NPTNQ9Y639 398 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 TRBV23-1A0A0A0MS06 115 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 FA2HQ7L5A8 372 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 OIP5O43482 229 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 CLEC2LP0C7M8 214 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 SP9P0CG40 484 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 LPAR6P43657 344 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 FADS6Q8N9I5 356 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 MYEOVQ96EZ4 313 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 INSIG2Q9Y5U4 225 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 ZNF320A2RRD8 509 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 NKX2-5P52952 324 aaPredicted RBP18.18■□□□□ 0.5
UPF1-207ENST00000599848 HCCSP53701 268 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 FNDC7Q5VTL7 733 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 MAP6Q96JE9 813 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 IL20Q9NYY1 176 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 V9GYS6 101 aa18.18■□□□□ 0.5
UPF1-207ENST00000599848 VDAC1P21796 283 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 FAM109BQ6ICB4 259 aaPredicted RBP18.17■□□□□ 0.5
UPF1-207ENST00000599848 C17orf47Q8NEP4 570 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 FZR1Q9UM11 496 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 PPIAL4EA0A075B759 164 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 PPIAL4DF5H284 164 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 NUPL2O15504 423 aaKnown RBP18.17■□□□□ 0.5
UPF1-207ENST00000599848 ADAM11O75078 769 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 PPIAL4FP0DN26 164 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 GALP22466 123 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 RPL30P62888 115 aaKnown RBP18.17■□□□□ 0.5
UPF1-207ENST00000599848 TNFRSF19Q9NS68 423 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 SLC25A37Q9NYZ2 338 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 PPIAL4AQ9Y536 164 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 ZC3H12DA2A288 527 aaKnown RBP18.17■□□□□ 0.5
UPF1-207ENST00000599848 FAM3AP98173 230 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 PIPOXQ9P0Z9 390 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 FCER1GP30273 86 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 KIR2DL1P43626 348 aaPredicted RBP18.17■□□□□ 0.5
UPF1-207ENST00000599848 OXA1LQ15070 435 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 COL13A1Q5TAT6 717 aaPredicted RBP18.17■□□□□ 0.5
UPF1-207ENST00000599848 ZDHHC22Q8N966 263 aa18.17■□□□□ 0.5
UPF1-207ENST00000599848 ATP6V1G2-DDX39BF2Z307 99 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 J3QT63 122 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms