RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 IGKV1D-17A0A075B6S4 117 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 IGKV1-27A0A075B6S5 117 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 GPR37O15354 613 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 SIGLEC5O15389 551 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 TCF21O43680 179 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 SYNGR1O43759 233 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 ECDO95905 644 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-213ENST00000598355 PLATP00750 562 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 GLRA1P23415 457 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 ERVK11-1P61568 191 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 IL24Q13007 206 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 KRTAP24-1Q3LI83 254 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 ACP7Q6ZNF0 438 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 CALHM1Q8IU99 346 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 FGFRL1Q8N441 504 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 LY6G5BQ8NDX9 201 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 DNAAF1Q8NEP3 725 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 OR51A4Q8NGJ6 313 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 OR10AC1Q8NH08 325 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 C8orf46Q8TAG6 207 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 CCL13Q99616 98 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 RASL12Q9NYN1 266 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 DNAJB11Q9UBS4 358 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 HHLA2Q9UM44 414 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 DIMT1Q9UNQ2 313 aaKnown RBP13.36□□□□□ -0.27
TRIM28-213ENST00000598355 POLDIP2Q9Y2S7 368 aa13.36□□□□□ -0.27
TRIM28-213ENST00000598355 IGKV1-9A0A0C4DH69 117 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 IRGMA1A4Y4 181 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 TMEM212A6NML5 194 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 OR2AT4A6NND4 320 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 E9PI62 339 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 H0YJX3 145 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 H3BSH0 61 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 ZFPL1O95159 310 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 LIPFP07098 398 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 PSG2P11465 335 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 PIPP12273 146 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-213ENST00000598355 SELLP14151 372 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 SLC34A1Q06495 639 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 ARMCX4Q5H9R4 360 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 C9orf139Q6ZV77 190 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 ZNF485Q8NCK3 441 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 NRG4Q8WWG1 115 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 TMEM158Q8WZ71 300 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 TFAP2CQ92754 450 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 SDSLQ96GA7 329 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 VCXQ9H320 206 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 SNTG1Q9NSN8 517 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 RPUSD1Q9UJJ7 312 aaKnown RBP13.35□□□□□ -0.27
TRIM28-213ENST00000598355 NUP50Q9UKX7 468 aa13.35□□□□□ -0.27
TRIM28-213ENST00000598355 CAB39Q9Y376 341 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-213ENST00000598355 NKX6-3A6NJ46 265 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 RPSAP08865 295 aaKnown RBP13.34□□□□□ -0.27
TRIM28-213ENST00000598355 ETV1P50549 477 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 FUT6P51993 359 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 CAV3P56539 151 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 HILS1P60008 231 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 IL13RA1P78552 427 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 CNN3Q15417 329 aaKnown RBP13.34□□□□□ -0.27
TRIM28-213ENST00000598355 SMIM21Q3B7S5 101 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 BTN2A1Q7KYR7 527 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 PHC2Q8IXK0 858 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 C8orf59Q8N0T1 100 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-213ENST00000598355 OR5T2Q8NGG2 359 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 TMIGD2Q96BF3 282 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 SIRPDQ9H106 197 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 RASSF4Q9H2L5 321 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 PLCXD1Q9NUJ7 323 aa13.34□□□□□ -0.27
TRIM28-213ENST00000598355 CNOT2Q9NZN8 540 aaKnown RBP13.34□□□□□ -0.27
TRIM28-213ENST00000598355 TRAV40A0A0B4J280 105 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 ZNF879B4DU55 563 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 VENTXO95231 258 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 MT-ND2P03891 347 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 CCDC159P0C7I6 412 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 IGHV4-38-2P0DP08 117 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 GMFBP60983 142 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 FGF12P61328 243 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 CDK5R1Q15078 307 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 DGUOKQ16854 277 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 CCDC58Q4VC31 144 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 XAF1Q6GPH4 301 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 CRIP3Q6Q6R5 217 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 PARP16Q8N5Y8 322 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 PNLDC1Q8NA58 520 aaKnown RBP13.33□□□□□ -0.28
TRIM28-213ENST00000598355 OR52N1Q8NH53 320 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 TRMT10AQ8TBZ6 339 aaKnown RBP13.33□□□□□ -0.28
TRIM28-213ENST00000598355 ZNF418Q8TF45 676 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-213ENST00000598355 ZFAND2BQ8WV99 257 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 ST8SIA4Q92187 359 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 RGP1Q92546 391 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-213ENST00000598355 SPSB1Q96BD6 273 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 MED30Q96HR3 178 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 ZNF488Q96MN9 340 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 SLC6A7Q99884 636 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 DCTN5Q9BTE1 182 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 ZNF69Q9UC07 566 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 SLC7A11Q9UPY5 501 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 EXOSC1Q9Y3B2 195 aaKnown RBP13.33□□□□□ -0.28
TRIM28-213ENST00000598355 MAB21L2Q9Y586 359 aa13.33□□□□□ -0.28
TRIM28-213ENST00000598355 ERICH4A6NGS2 130 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms