RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 METTL9Q9H1A3 318 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 FAIMQ9NVQ4 179 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 RHBDL2Q9NX52 303 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 FBLN5Q9UBX5 448 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 IGKV1-12A0A0C4DH73 117 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 IGHV3-64DA0A0J9YX35 117 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 A0A1W2PPR1 153 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 A6NLC8 198 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 TMEM14DPA8MWL7 114 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 ZNF780AO75290 641 aaPredicted RBP12.43□□□□□ -0.42
VRK3-212ENST00000596814 IGKV1D-12P01611 117 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 ADH4P08319 380 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 ELK1P19419 428 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 RAB6AP20340 208 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 SERPINA2P20848 420 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 SRP9P49458 86 aaKnown RBP12.43□□□□□ -0.42
VRK3-212ENST00000596814 EFNB2P52799 333 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 ART1P52961 327 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 TNFAIP6P98066 277 aaPredicted RBP12.43□□□□□ -0.42
VRK3-212ENST00000596814 IL24Q13007 206 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 UNC119Q13432 240 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 GPR176Q14439 515 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 PRAMEF6Q5VXH4 476 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 MKXQ8IYA7 352 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 CELF2-AS1Q8N7Q2 184 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 SCCPDHQ8NBX0 429 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 OR10K1Q8NGX5 313 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 KCNG3Q8TAE7 436 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 AQP3Q92482 292 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 SLAMF9Q96A28 289 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 PTX4Q96A99 478 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 DIRAS2Q96HU8 199 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 MEGF10Q96KG7 1140 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 IL36GQ9NZH8 169 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 POLDIP2Q9Y2S7 368 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 COL12A1Q99715 3063 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 ARFGEF3Q5TH69 2177 aa12.43□□□□□ -0.42
VRK3-212ENST00000596814 CHD3Q12873 2000 aaKnown RBP12.43□□□□□ -0.42
VRK3-212ENST00000596814 A0A1W2PP11 408 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 SYNGR1O43759 233 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 CRTAPO75718 401 aaPredicted RBP12.42□□□□□ -0.42
VRK3-212ENST00000596814 PTBP3O95758 552 aaKnown RBP12.42□□□□□ -0.42
VRK3-212ENST00000596814 MPIG6BO95866 241 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 CSTBP04080 98 aaKnown RBP12.42□□□□□ -0.42
VRK3-212ENST00000596814 BMP4P12644 408 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 TALDO1P37837 337 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 SWI5Q1ZZU3 235 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 SPANXN2Q5MJ10 180 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 CNIH2Q6PI25 160 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 CCDC190Q86UF4 302 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 TMEM200AQ86VY9 491 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 CMTM4Q8IZR5 234 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 TMEM104Q8NE00 496 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 ITLN1Q8WWA0 313 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 S100ZQ8WXG8 99 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 RAB40AQ8WXH6 277 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 TMEM59Q9BXS4 323 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 TLNRD1Q9H1K6 362 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 ABCG5Q9H222 651 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 AKIP1Q9NQ31 210 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 EXTL2Q9UBQ6 330 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 IL19Q9UHD0 177 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 RAB22AQ9UL26 194 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 RAI1Q7Z5J4 1906 aaPredicted RBP12.42□□□□□ -0.42
VRK3-212ENST00000596814 CACNA1DQ01668 2161 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 TRAPPC2LH3BP13 241 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 CDIPTO14735 213 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 CDC14BO60729 498 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 KDM4BO94953 1096 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 HTR3BO95264 441 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 CD55P08174 381 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 COX6B1P14854 86 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 FAM209AQ5JX71 171 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 AGAP6Q5VW22 663 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 MS4A5Q9H3V2 200 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 BANF2Q9H503 90 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 UBTD1Q9HAC8 227 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 PCDHB16Q9NRJ7 776 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 CBLN4Q9NTU7 201 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 UFSP2Q9NUQ7 469 aa12.42□□□□□ -0.42
VRK3-212ENST00000596814 HRNRQ86YZ3 2850 aaPredicted RBP12.42□□□□□ -0.42
VRK3-212ENST00000596814 FAM221AA4D161 298 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 CTAG2O75638 210 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 RHBDL1O75783 438 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 SFTPBP07988 381 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 MGMTP16455 207 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 BCL3P20749 454 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 ETV6P41212 452 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 TESK1Q15569 626 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 MPPED2Q15777 294 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 CDH24Q86UP0 819 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 BATF2Q8N1L9 274 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 OR4M1Q8NGD0 313 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 S100A16Q96FQ6 103 aaKnown RBP12.41□□□□□ -0.42
VRK3-212ENST00000596814 GAL3ST1Q99999 423 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 ATG5Q9H1Y0 275 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 HMG20AQ9NP66 347 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 MTCH1Q9NZJ7 389 aa12.41□□□□□ -0.42
VRK3-212ENST00000596814 FBXO9Q9UK97 447 aaPredicted RBP12.41□□□□□ -0.42
VRK3-212ENST00000596814 hCG_1807616A0A1W2PRN6 198 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms