RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 POC1AQ8NBT0 407 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 DNAAF1Q8NEP3 725 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 OR51A4Q8NGJ6 313 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 OR5D14Q8NGL3 314 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 TRMT10AQ8TBZ6 339 aaKnown RBP12.52□□□□□ -0.41
UPF1-202ENST00000594243 RAB40AQ8WXH6 277 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 MYDGFQ969H8 173 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 TMPRSS13Q9BYE2 586 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 PKIBQ9C010 78 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 WDR13Q9H1Z4 485 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 MMP26Q9NRE1 261 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 FKBP14Q9NWM8 211 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 NLKQ9UBE8 527 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 DHDHQ9UQ10 334 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 ERGIC3Q9Y282 383 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 TPRKBQ9Y3C4 175 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 INSIG2Q9Y5U4 225 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 CSPG4Q6UVK1 2322 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 JMJD1CQ15652 2540 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 LOC105371242A0A075B767 164 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 PTGES3LE9PB15 166 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 SLC1A7O00341 560 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 MYL12BO14950 172 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 OGG1O15527 345 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 MPZP25189 248 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 C21orf33P30042 268 aaPredicted RBP12.51□□□□□ -0.41
UPF1-202ENST00000594243 TAS2R43P59537 309 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 IL24Q13007 206 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 CDK5R1Q15078 307 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 ANGPTL5Q86XS5 388 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 OR5T2Q8NGG2 359 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 OR10AC1Q8NH08 325 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 GPR148Q8TDV2 347 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 NPRL2Q8WTW4 380 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 TSEN15Q8WW01 171 aaKnown RBP12.51□□□□□ -0.41
UPF1-202ENST00000594243 SPSB1Q96BD6 273 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 SEH1LQ96EE3 360 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 MED30Q96HR3 178 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 CCL13Q99616 98 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 MRI1Q9BV20 369 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 ZCCHC4Q9H5U6 513 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 SNTG1Q9NSN8 517 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 CTSZQ9UBR2 303 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 RAB26Q9ULW5 256 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 ABCA1O95477 2261 aa12.51□□□□□ -0.41
UPF1-202ENST00000594243 KIR2DS1A0A191URI9 304 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 NKX6-3A6NJ46 265 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 OR2AT4A6NND4 320 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 DVL1O14640 695 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 GPR37O15354 613 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 NDUFB3O43676 98 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 SYNGR1O43759 233 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 ALX3O95076 343 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 ECDO95905 644 aaPredicted RBP12.5□□□□□ -0.41
UPF1-202ENST00000594243 CDK1P06493 297 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 LIPFP07098 398 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 PGA5P0DJD9 388 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 AZGP1P25311 298 aaKnown RBP12.5□□□□□ -0.41
UPF1-202ENST00000594243 MTCP1P56278 107 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 WNT4P56705 351 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 SCGB2A2Q13296 93 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 RNLSQ5VYX0 342 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 STUMQ69YW2 141 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 XAF1Q6GPH4 301 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 LHFPL2Q6ZUX7 228 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 CALHM1Q8IU99 346 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 PARP16Q8N5Y8 322 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 NANOGP1Q8N7R0 232 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 ZNF485Q8NCK3 441 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 NANPQ8TBE9 248 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 RPS4Y2Q8TD47 263 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 SMIM19Q96E16 107 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 RASSF4Q9H2L5 321 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 ZNF281Q9Y2X9 895 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 PCDHGB5Q9Y5G0 923 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 AUP1Q9Y679 476 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 HIVEP2P31629 2446 aa12.5□□□□□ -0.41
UPF1-202ENST00000594243 IGHV2-70DA0A0C4DH43 119 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 IGKV1-9A0A0C4DH69 117 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 CYB5AP00167 134 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 AVPP01185 164 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 MT-ND2P03891 347 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 CD2P06729 351 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 PAX2Q02962 417 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 PAX8Q06710 450 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 SMIM21Q3B7S5 101 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 LRRC10Q5BKY1 277 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 ACP7Q6ZNF0 438 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 ZNF788Q6ZQV5 615 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 MKXQ8IYA7 352 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 ANGPTL6Q8NI99 470 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 OPALINQ96PE5 141 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 NUDT16L1Q9BRJ7 211 aaKnown RBP12.49□□□□□ -0.41
UPF1-202ENST00000594243 CDCA4Q9BXL8 241 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 METRNQ9UJH8 293 aa12.49□□□□□ -0.41
UPF1-202ENST00000594243 RRP15Q9Y3B9 282 aaKnown RBP12.49□□□□□ -0.41
UPF1-202ENST00000594243 IGKV1-27A0A075B6S5 117 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 ENSAO43768 121 aaKnown RBP12.48□□□□□ -0.41
UPF1-202ENST00000594243 NXPH2O95156 264 aa12.48□□□□□ -0.41
UPF1-202ENST00000594243 LALBAP00709 142 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms