RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 ADAT3Q96EY9 351 aaPredicted RBP13.01□□□□□ -0.33
LIG3-215ENST00000592690 DCLRE1BQ9H816 532 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 FGF20Q9NP95 211 aaPredicted RBP13.01□□□□□ -0.33
LIG3-215ENST00000592690 ZNF69Q9UC07 566 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 NUP50Q9UKX7 468 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 DSCAML1Q8TD84 2053 aa13□□□□□ -0.33
LIG3-215ENST00000592690 IGKV1D-17A0A075B6S4 117 aa13□□□□□ -0.33
LIG3-215ENST00000592690 IGKV1-27A0A075B6S5 117 aa13□□□□□ -0.33
LIG3-215ENST00000592690 FAM230AA0A1W2PPH8 454 aa13□□□□□ -0.33
LIG3-215ENST00000592690 NKX6-3A6NJ46 265 aa13□□□□□ -0.33
LIG3-215ENST00000592690 OR2AT4A6NND4 320 aa13□□□□□ -0.33
LIG3-215ENST00000592690 E9PI62 339 aa13□□□□□ -0.33
LIG3-215ENST00000592690 GATBO75879 557 aaKnown RBP13□□□□□ -0.33
LIG3-215ENST00000592690 PGA5P0DJD9 388 aa13□□□□□ -0.33
LIG3-215ENST00000592690 PPIAL4GP0DN37 164 aa13□□□□□ -0.33
LIG3-215ENST00000592690 MPZP25189 248 aa13□□□□□ -0.33
LIG3-215ENST00000592690 DGUOKQ16854 277 aa13□□□□□ -0.33
LIG3-215ENST00000592690 ANGPTL5Q86XS5 388 aa13□□□□□ -0.33
LIG3-215ENST00000592690 BCL6BQ8N143 479 aaPredicted RBP13□□□□□ -0.33
LIG3-215ENST00000592690 BPIFB2Q8N4F0 458 aa13□□□□□ -0.33
LIG3-215ENST00000592690 POC1AQ8NBT0 407 aa13□□□□□ -0.33
LIG3-215ENST00000592690 SETD9Q8NE22 299 aa13□□□□□ -0.33
LIG3-215ENST00000592690 ZNF418Q8TF45 676 aaPredicted RBP13□□□□□ -0.33
LIG3-215ENST00000592690 JAM3Q9BX67 310 aa13□□□□□ -0.33
LIG3-215ENST00000592690 DNTTIP1Q9H147 329 aa13□□□□□ -0.33
LIG3-215ENST00000592690 RPUSD1Q9UJJ7 312 aaKnown RBP13□□□□□ -0.33
LIG3-215ENST00000592690 ZNF222Q9UK12 451 aa13□□□□□ -0.33
LIG3-215ENST00000592690 NDUFB3O43676 98 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 SFTPBP07988 381 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 PSG2P11465 335 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 CAPGP40121 348 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 GABRA2P47869 451 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 ETV1P50549 477 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 IL18R1Q13478 541 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 ACP7Q6ZNF0 438 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 C10orf35Q96D05 121 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 MYCBPQ99417 103 aaPredicted RBP12.99□□□□□ -0.33
LIG3-215ENST00000592690 PCGF1Q9BSM1 259 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 C19orf24Q9BVV8 132 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 PKIBQ9C010 78 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 HHLA2Q9UM44 414 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 SLC7A11Q9UPY5 501 aa12.99□□□□□ -0.33
LIG3-215ENST00000592690 SOX21Q9Y651 276 aaPredicted RBP12.99□□□□□ -0.33
LIG3-215ENST00000592690 A0A0A6YYJ9 748 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 IGKV1-9A0A0C4DH69 117 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 ZNF879B4DU55 563 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 H0YAE9 185 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 SIGLEC5O15389 551 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 NOS1APO75052 506 aaPredicted RBP12.98□□□□□ -0.33
LIG3-215ENST00000592690 ZFPL1O95159 310 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 ECDO95905 644 aaPredicted RBP12.98□□□□□ -0.33
LIG3-215ENST00000592690 PLATP00750 562 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 ACAA1P09110 424 aaPredicted RBP12.98□□□□□ -0.33
LIG3-215ENST00000592690 MMP9P14780 707 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 GTF2A1P52655 376 aaPredicted RBP12.98□□□□□ -0.33
LIG3-215ENST00000592690 HILS1P60008 231 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 IL13RA1P78552 427 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 CNN3Q15417 329 aaKnown RBP12.98□□□□□ -0.33
LIG3-215ENST00000592690 TUSC1Q2TAM9 212 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 SMIM21Q3B7S5 101 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 LRRC10Q5BKY1 277 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 XAF1Q6GPH4 301 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 ZNF676Q8N7Q3 588 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 PNLDC1Q8NA58 520 aaKnown RBP12.98□□□□□ -0.33
LIG3-215ENST00000592690 OR13C3Q8NGS6 347 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 NRG4Q8WWG1 115 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 PP6455Q8WZ26 134 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 FGGYQ96C11 551 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 TBX15Q96SF7 602 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 PDCD1LG2Q9BQ51 273 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 NRIP2Q9BQI9 281 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 SUCNR1Q9BXA5 334 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 SIRPDQ9H106 197 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 ELL3Q9HB65 397 aaPredicted RBP12.98□□□□□ -0.33
LIG3-215ENST00000592690 RASL12Q9NYN1 266 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 SLC25A10Q9UBX3 287 aaPredicted RBP12.98□□□□□ -0.33
LIG3-215ENST00000592690 POLDIP2Q9Y2S7 368 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 MAB21L2Q9Y586 359 aa12.98□□□□□ -0.33
LIG3-215ENST00000592690 NXPH2O95156 264 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 SERPINA3P01011 423 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 LIPFP07098 398 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 ZNF20P17024 532 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 ATF1P18846 271 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 FPR2P25090 351 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 DCKP27707 260 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 CEBPDP49716 269 aaPredicted RBP12.97□□□□□ -0.33
LIG3-215ENST00000592690 FUT6P51993 359 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 GBX2P52951 348 aaPredicted RBP12.97□□□□□ -0.33
LIG3-215ENST00000592690 ARF6P62330 175 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 SLC34A1Q06495 639 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 IL24Q13007 206 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 MRPL28Q13084 256 aaKnown RBP12.97□□□□□ -0.33
LIG3-215ENST00000592690 C11orf91Q3C1V1 193 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 OR2G6Q5TZ20 316 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 LAIR2Q6ISS4 152 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 USP43Q70EL4 1123 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 EGFL6Q8IUX8 553 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 C8orf59Q8N0T1 100 aaPredicted RBP12.97□□□□□ -0.33
LIG3-215ENST00000592690 CD177Q8N6Q3 437 aa12.97□□□□□ -0.33
LIG3-215ENST00000592690 SIGLECL1Q8N7X8 197 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms