RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ASCL4Q6XD76 172 aa21.29■■□□□ 1
SHMT1-207ENST00000580002 CLEC18CQ8NCF0 446 aa21.29■■□□□ 1
SHMT1-207ENST00000580002 CYSLTR2Q9NS75 346 aa21.29■■□□□ 1
SHMT1-207ENST00000580002 ZNF581Q9P0T4 197 aa21.29■■□□□ 1
SHMT1-207ENST00000580002 EXTL2Q9UBQ6 330 aa21.29■■□□□ 1
SHMT1-207ENST00000580002 KLF2Q9Y5W3 355 aaPredicted RBP21.29■■□□□ 1
SHMT1-207ENST00000580002 MPIG6BO95866 241 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 MOGAT2Q3SYC2 334 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 UBE2NLQ5JXB2 153 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 DHRS9Q9BPW9 319 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 NICN1Q9BSH3 213 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 CACNA1DQ01668 2161 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 A0A0A6YYD4 124 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 CRTAPO75718 401 aaPredicted RBP21.28■■□□□ 1
SHMT1-207ENST00000580002 BCL3P20749 454 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 PEX19P40855 299 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 ART1P52961 327 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 DAZAP2Q15038 168 aaPredicted RBP21.28■■□□□ 1
SHMT1-207ENST00000580002 AQP3Q92482 292 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 SLC22A4Q9H015 551 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 ETV7Q9Y603 341 aa21.28■■□□□ 1
SHMT1-207ENST00000580002 A6NNC1 897 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 CDC14BO60729 498 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 HTR3BO95264 441 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 APOA1P02647 267 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 GMFBP60983 142 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 LRRC28Q86X40 367 aaPredicted RBP21.27■■□□□ 1
SHMT1-207ENST00000580002 ZNF573Q86YE8 665 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 SNX29P2Q8IUI4 249 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 ITLN1Q8WWA0 313 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 OR2V2Q96R30 315 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 SOSTQ9BQB4 213 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 ABCG5Q9H222 651 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 IL36RNQ9UBH0 155 aa21.27■■□□□ 1
SHMT1-207ENST00000580002 LRP5LA4QPB2 252 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 TMEM127O75204 238 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 CTAG2O75638 210 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 PTHLHP12272 177 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 RSU1Q15404 277 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 TGIF2LYQ8IUE0 185 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 MUC15Q8N387 334 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 MRI1Q9BV20 369 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 METTL9Q9H1A3 318 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 ATG5Q9H1Y0 275 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 RBFOX1Q9NWB1 397 aaKnown RBP21.26■□□□□ 0.99
SHMT1-207ENST00000580002 TREM2Q9NZC2 230 aa21.26■□□□□ 0.99
SHMT1-207ENST00000580002 CHD3Q12873 2000 aaKnown RBP21.26■□□□□ 0.99
SHMT1-207ENST00000580002 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-207ENST00000580002 CDK2P24941 298 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 PMELP40967 661 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 PDCD1Q15116 288 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 ZNF79Q15937 498 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 SWI5Q1ZZU3 235 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 MEGF10Q96KG7 1140 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 S100A13Q99584 98 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 LPAR5Q9H1C0 372 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 A0A0G2JMP0 313 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 A0A0X1KG70 313 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 FABP12A6NFH5 140 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 ETV6P41212 452 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 CCL8P80075 99 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 FAM131AQ6UXB0 335 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 LINC00299Q6ZSB3 139 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 PXT1Q8NFP0 134 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 OR4M2Q8NGB6 313 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 GCDHQ92947 438 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-207ENST00000580002 SDHCQ99643 169 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-207ENST00000580002 RAB22AQ9UL26 194 aa21.25■□□□□ 0.99
SHMT1-207ENST00000580002 MRPS7Q9Y2R9 242 aaKnown RBP21.25■□□□□ 0.99
SHMT1-207ENST00000580002 ARFGEF3Q5TH69 2177 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 C17orf100A8MU93 164 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 VSTM5A8MXK1 200 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 CLDN25C9JDP6 229 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 J3QT63 122 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 CD8AP01732 235 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 MGMTP16455 207 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 MPZP25189 248 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 COL8A1P27658 744 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 CD200P41217 278 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 SNU13P55769 128 aaKnown RBP21.24■□□□□ 0.99
SHMT1-207ENST00000580002 SCAND1P57086 179 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 EFNB3Q15768 340 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 SEH1LQ96EE3 360 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 SELENOIQ9C0D9 397 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 NKIRAS2Q9NYR9 191 aa21.24■□□□□ 0.99
SHMT1-207ENST00000580002 HELZ2Q9BYK8 2649 aaKnown RBP21.24■□□□□ 0.99
SHMT1-207ENST00000580002 A6NLC8 198 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 M0R233 179 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 AKR7A2O43488 359 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 SOD3P08294 240 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 TNFAIP6P98066 277 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-207ENST00000580002 PIGYQ3MUY2 71 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 SPANXN2Q5MJ10 180 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 SP5Q6BEB4 398 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-207ENST00000580002 SPERTQ8NA61 448 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 KCNG3Q8TAE7 436 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 CPNE2Q96FN4 548 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-207ENST00000580002 ABHD1Q96SE0 405 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 C14orf119Q9NWQ9 140 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 FBLN5Q9UBX5 448 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms