RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 KIR3DL3Q8N743 410 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 OR2G2Q8NGZ5 317 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 ZNF48Q96MX3 618 aaPredicted RBP12.26□□□□□ -0.45
SS18-212ENST00000579061 PCGF1Q9BSM1 259 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 DCTN5Q9BTE1 182 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 PKIBQ9C010 78 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 CHST5Q9GZS9 411 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 PRDM13Q9H4Q3 707 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 INPP5EQ9NRR6 644 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 MRPS18AQ9NVS2 196 aaKnown RBP12.26□□□□□ -0.45
SS18-212ENST00000579061 SMPD3Q9NY59 655 aaPredicted RBP12.26□□□□□ -0.45
SS18-212ENST00000579061 DUX4Q9UBX2 424 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 SLC25A10Q9UBX3 287 aaPredicted RBP12.26□□□□□ -0.45
SS18-212ENST00000579061 ZNF222Q9UK12 451 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 SLC7A11Q9UPY5 501 aa12.26□□□□□ -0.45
SS18-212ENST00000579061 IGKV1D-17A0A075B6S4 117 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 IGHV3OR16-10A0A075B7F0 116 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 TMEM89A2RUT3 159 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 A6NIN4 97 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 CLDN34H7C241 214 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 FADS2O95864 444 aaKnown RBP12.25□□□□□ -0.45
SS18-212ENST00000579061 SERPINA3P01011 423 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 ISG15P05161 165 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 SFTPBP07988 381 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 HTR1AP08908 422 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 PRTN3P24158 256 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 GABRA2P47869 451 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 COMPP49747 757 aaPredicted RBP12.25□□□□□ -0.45
SS18-212ENST00000579061 FUT6P51993 359 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 ARF6P62330 175 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 ACTG1P63261 375 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 RAB40BQ12829 278 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 IKZF1Q13422 519 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 GALEQ14376 348 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 SYS1Q8N2H4 156 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 FGFRL1Q8N441 504 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 ZNF555Q8NEP9 628 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 PP6455Q8WZ26 134 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 SDSLQ96GA7 329 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 FRRS1LQ9P0K9 344 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 AASSQ9UDR5 926 aa12.25□□□□□ -0.45
SS18-212ENST00000579061 RPL36Q9Y3U8 105 aaKnown RBP12.25□□□□□ -0.45
SS18-212ENST00000579061 CENPVL3A0A0U1RRI6 287 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 DNAJC9-AS1A6NH13 148 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 SYNGR1O43759 233 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 IGHA1P01876 353 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 RPSAP08865 295 aaKnown RBP12.24□□□□□ -0.45
SS18-212ENST00000579061 SELLP14151 372 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 IL24Q13007 206 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 MRPL28Q13084 256 aaKnown RBP12.24□□□□□ -0.45
SS18-212ENST00000579061 BAMBIQ13145 260 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 UBE2V2Q15819 145 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 DGUOKQ16854 277 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 LPCAT4Q643R3 524 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 METAP1DQ6UB28 335 aaPredicted RBP12.24□□□□□ -0.45
SS18-212ENST00000579061 C1orf122Q6ZSJ8 110 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 CMTM4Q8IZR5 234 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 PACRGLQ8N7B6 248 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 PELI1Q96FA3 418 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 C1orf147Q96MC9 270 aaPredicted RBP12.24□□□□□ -0.45
SS18-212ENST00000579061 NRIP2Q9BQI9 281 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 HES4Q9HCC6 221 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 MAB21L2Q9Y586 359 aa12.24□□□□□ -0.45
SS18-212ENST00000579061 TRBV23-1A0A0A0MS06 115 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 J3QLW9 94 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 NXPH2O95156 264 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 ZNF19P17023 458 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 NANOS3P60323 173 aaKnown RBP12.23□□□□□ -0.45
SS18-212ENST00000579061 ERVK11-1P61568 191 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 ALKBH1Q13686 389 aaKnown RBP12.23□□□□□ -0.45
SS18-212ENST00000579061 CNN3Q15417 329 aaKnown RBP12.23□□□□□ -0.45
SS18-212ENST00000579061 KLHL22Q53GT1 634 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 C12orf54Q6X4T0 127 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 BRD3OSQ6XYD6 125 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 UTS2BQ765I0 119 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 CALHM1Q8IU99 346 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 RDH10Q8IZV5 341 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 ZNF561Q8N587 486 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 DNAAF1Q8NEP3 725 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 HAVCR2Q8TDQ0 301 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 GATAD2BQ8WXI9 593 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 H1FXQ92522 213 aaKnown RBP12.23□□□□□ -0.45
SS18-212ENST00000579061 GCDHQ92947 438 aaPredicted RBP12.23□□□□□ -0.45
SS18-212ENST00000579061 C4orf36Q96KX1 117 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 ZNF649Q9BS31 505 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 ALG8Q9BVK2 526 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 NOX4Q9NPH5 578 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 ERVK13-1Q9NX77 482 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 HHLA2Q9UM44 414 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 MYRFQ9Y2G1 1151 aa12.23□□□□□ -0.45
SS18-212ENST00000579061 IGHV1-69DA0A0B4J2H0 117 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 FAM230AA0A1W2PPH8 454 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 RFPL4AA6NLU0 287 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 OR4C45A6NMZ5 311 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 RFPL4AL1F8VTS6 287 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 H3BSH0 61 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 M0R1W7 72 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 IGHV1-69P01742 117 aa12.22□□□□□ -0.45
SS18-212ENST00000579061 RNASE1P07998 156 aaKnown RBP12.22□□□□□ -0.45
SS18-212ENST00000579061 NDUFB7P17568 137 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms