RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 SRSF5Q13243 272 aaKnown RBP8.47□□□□□ -1.05
CCDC40-212ENST00000574799 PPA1Q15181 289 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ADIRFQ15847 76 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ALKBH2Q6NS38 261 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 OGFOD3Q6PK18 319 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF66Q6ZN08 573 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 MAMDC2Q7Z304 686 aaPredicted RBP8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ABHD12BQ7Z5M8 362 aaPredicted RBP8.47□□□□□ -1.05
CCDC40-212ENST00000574799 POC1AQ8NBT0 407 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF2Q9BSG1 426 aaPredicted RBP8.47□□□□□ -1.05
CCDC40-212ENST00000574799 MMP25Q9NPA2 562 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 TUBG2Q9NRH3 451 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 DKKL1Q9UK85 242 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ST8SIA3O43173 380 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ACKR1Q16570 336 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF684Q5T5D7 378 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 FHL5Q5TD97 284 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ETFRF1Q6IPR1 90 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ARMC6Q6NXE6 501 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 GKN2Q86XP6 184 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF440Q8IYI8 595 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 PRR22Q8IZ63 422 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 OR13H1Q8NG92 308 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 OR14L1PQ8NHC6 308 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 KCNG3Q8TAE7 436 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ARHGAP5-AS1Q96IT6 56 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 OPN3Q9H1Y3 402 aaPredicted RBP8.47□□□□□ -1.05
CCDC40-212ENST00000574799 GPR137BO60478 399 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 RAB38P57729 211 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ERVFRD-1P60508 538 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 MRPS34P82930 218 aaKnown RBP8.47□□□□□ -1.05
CCDC40-212ENST00000574799 ELOBQ15370 118 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 FAM189A2Q15884 450 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 HLA-DQA1Q5Y7H0 255 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 MED25Q71SY5 747 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 METTL27Q8N6F8 245 aaPredicted RBP8.47□□□□□ -1.05
CCDC40-212ENST00000574799 NT5CQ8TCD5 201 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 TMEM18Q96B42 140 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 HIST1H2BLQ99880 126 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 PPP1R14DQ9NXH3 145 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 HS3ST3B1Q9Y662 390 aa8.47□□□□□ -1.05
CCDC40-212ENST00000574799 FIGNL2A6NMB9 653 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 PPP5D1E7EU14 171 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 NPIPA5E9PKD4 350 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 RPS2P15880 293 aaKnown RBP8.46□□□□□ -1.05
CCDC40-212ENST00000574799 RPS4Y1P22090 263 aaKnown RBP8.46□□□□□ -1.05
CCDC40-212ENST00000574799 GABRR1P24046 479 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 RPP30P78346 268 aaKnown RBP8.46□□□□□ -1.05
CCDC40-212ENST00000574799 HLA-DRB3P79483 266 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF266Q14584 549 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 SPIN3Q5JUX0 258 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 TMEM268Q5VZI3 342 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 DNM1P34Q6PK57 102 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF574Q6ZN55 896 aaPredicted RBP8.46□□□□□ -1.05
CCDC40-212ENST00000574799 CMTM1Q8IZ96 169 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 OR52N5Q8NH56 324 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 ZNF576Q9H609 170 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 GPR173Q9NS66 373 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 PRODH2Q9UF12 536 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 NPIPA1Q9UND3 350 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 CLDN16Q9Y5I7 305 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 R4GMQ9 66 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 LOC400499M0QZD8 3231 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 CPAMD8Q8IZJ3 1885 aa8.46□□□□□ -1.05
CCDC40-212ENST00000574799 TLCD2A6NGC4 264 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 HSPB2A8KAH6 182 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 H0YGG7 62 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 ATXN7O15265 892 aaPredicted RBP8.46□□□□□ -1.06
CCDC40-212ENST00000574799 NKX2-2O95096 273 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 NXPH3O95157 252 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 BPNT1O95861 308 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 CST2P09228 141 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 TMEM225BP0DP42 221 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 ARF3P61204 181 aaPredicted RBP8.46□□□□□ -1.06
CCDC40-212ENST00000574799 HSPB2Q16082 182 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 OR5L1Q8NGL2 311 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 GPBAR1Q8TDU6 330 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 SLC25A31Q9H0C2 315 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 NSG1A0A0A6YYJ2 146 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 TCRBV21S2A2A0A5A6 115 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 FOXS1O43638 330 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 ZNF205O95201 554 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 HIST1H1DP16402 221 aaKnown RBP8.46□□□□□ -1.06
CCDC40-212ENST00000574799 GNG10P50151 68 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 SLC37A1P57057 533 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 IQCJQ1A5X6 159 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 CST9LP1Q5W188 147 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 NCR3LG1Q68D85 454 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 DGAT2L6Q6ZPD8 337 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 NUP54Q7Z3B4 507 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 ZNF664Q8N3J9 261 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 ARL6IP6Q8N6S5 226 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 ZFYVE21Q9BQ24 234 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 PLEKHJ1Q9NW61 149 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 PADI1Q9ULC6 663 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 MMP17Q9ULZ9 603 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 SLC5A6Q9Y289 635 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 HEBP2Q9Y5Z4 205 aa8.46□□□□□ -1.06
CCDC40-212ENST00000574799 PRSS37A4D1T9 235 aa8.45□□□□□ -1.06
CCDC40-212ENST00000574799 A8MVM7 634 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms