RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RBM4BQ9BQ04 359 aaKnown RBP12.19□□□□□ -0.46
CLN3-213ENST00000565047 NRIP2Q9BQI9 281 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 SLITRK2Q9H156 845 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 USE1Q9NZ43 259 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 C1RLQ9NZP8 487 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 A6NIN4 97 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 METTL15A6NJ78 407 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 NDUFA7O95182 113 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 APOL3O95236 402 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 IGHV4-59P01825 116 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 OMGP23515 440 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 UBE2V2Q15819 145 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 FIP1L1Q6UN15 594 aaKnown RBP12.18□□□□□ -0.46
CLN3-213ENST00000565047 COMMD2Q86X83 199 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 CALHM1Q8IU99 346 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 PDZD9Q8IXQ8 264 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 PRSS35Q8N3Z0 413 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 NPRL2Q8WTW4 380 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 SSMEM1Q8WWF3 244 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 AJUBAQ96IF1 538 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 RIBC2Q9H4K1 309 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 ZNF696Q9H7X3 374 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 ELL3Q9HB65 397 aaPredicted RBP12.18□□□□□ -0.46
CLN3-213ENST00000565047 SIRT7Q9NRC8 400 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 GPR173Q9NS66 373 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 ONECUT1Q9UBC0 465 aa12.18□□□□□ -0.46
CLN3-213ENST00000565047 IGKV1-27A0A075B6S5 117 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 NKX6-3A6NJ46 265 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 RFPL4AA6NLU0 287 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 RFPL4AL1F8VTS6 287 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 J3QT63 122 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 M0R1W7 72 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 RPP14O95059 124 aaKnown RBP12.17□□□□□ -0.46
CLN3-213ENST00000565047 KRT8P05787 483 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 HAAOP46952 286 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 KPNB1Q14974 876 aaKnown RBP12.17□□□□□ -0.46
CLN3-213ENST00000565047 ZNF573Q86YE8 665 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 TRUB1Q8WWH5 349 aaKnown RBP12.17□□□□□ -0.46
CLN3-213ENST00000565047 MGAM2Q2M2H8 2515 aa12.17□□□□□ -0.46
CLN3-213ENST00000565047 ENTPD6O75354 484 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 CIB2O75838 187 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 GABRB1P18505 474 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 PRDX2P32119 198 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 KIR3DL2P43630 455 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 GABRA2P47869 451 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 UBE2E1P51965 193 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 RPL15P61313 204 aaKnown RBP12.16□□□□□ -0.46
CLN3-213ENST00000565047 SNRPGP62308 76 aaKnown RBP12.16□□□□□ -0.46
CLN3-213ENST00000565047 KLRD1Q13241 179 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 TAF9Q16594 264 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 ANGPTL5Q86XS5 388 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 CMTM4Q8IZR5 234 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 PNKDQ8N490 385 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 YIPF7Q8N8F6 280 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 OR10H4Q8NGA5 316 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 H1FXQ92522 213 aaKnown RBP12.16□□□□□ -0.46
CLN3-213ENST00000565047 DYRK2Q92630 601 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 MBOAT4Q96T53 435 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 METTL8Q9H825 291 aaKnown RBP12.16□□□□□ -0.46
CLN3-213ENST00000565047 TNFRSF19Q9NS68 423 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 C19orf12Q9NSK7 152 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 ZNRD1Q9P1U0 126 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 GTF2A1LQ9UNN4 478 aa12.16□□□□□ -0.46
CLN3-213ENST00000565047 TRBV23-1A0A0A0MS06 115 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 F8VVB4 439 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 F8VWA3 439 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 EI24O14681 340 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 NPFFO15130 113 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 SPRY1O43609 319 aaPredicted RBP12.15□□□□□ -0.46
CLN3-213ENST00000565047 NDUFB7P17568 137 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 CEBPDP49716 269 aaPredicted RBP12.15□□□□□ -0.46
CLN3-213ENST00000565047 KRTAP10-3P60369 221 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 IL24Q13007 206 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 OCLNQ16625 522 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 TMEM200BQ69YZ2 307 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 ZNF561Q8N587 486 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 TBC1D15Q8TC07 691 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 PKIBQ9C010 78 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 MTCH1Q9NZJ7 389 aa12.15□□□□□ -0.46
CLN3-213ENST00000565047 MEGF8Q7Z7M0 2845 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 ANKRD61A6NGH8 418 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 GPR137BO60478 399 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 SAA4P35542 130 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 ALDH3A2P51648 485 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 RAG2P55895 527 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 NANOS3P60323 173 aaKnown RBP12.14□□□□□ -0.47
CLN3-213ENST00000565047 CDC42P60953 191 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 GUCA2AQ02747 115 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 SRSF4Q08170 494 aaKnown RBP12.14□□□□□ -0.47
CLN3-213ENST00000565047 ODF4Q2M2E3 257 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 SMIM21Q3B7S5 101 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 ZFP1Q6P2D0 407 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 FDX2Q6P4F2 183 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 RDH10Q8IZV5 341 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 CCDC54Q8NEL0 328 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 TMEM185AQ8NFB2 350 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 C17orf50Q8WW18 174 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 WFDC12Q8WWY7 111 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 RFKQ969G6 155 aa12.14□□□□□ -0.47
CLN3-213ENST00000565047 ZNF649Q9BS31 505 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms