RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GSTT2BP0CG30 244 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 PCMT1P22061 227 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 CD80P33681 288 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 CRYBB2P43320 205 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 NR4A2P43354 598 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 GNG10P50151 68 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 AKR1C2P52895 323 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 DOC2BQ14184 412 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 MOGQ16653 247 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 MICBQ29980 383 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 ADGRE4PQ86SQ3 457 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 IQCF2Q8IXL9 164 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 TMEM123Q8N131 208 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 MUC15Q8N387 334 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 OR51H1Q8NH63 302 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 TMEM171Q8WVE6 324 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 C22orf15Q8WYQ4 148 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 COPZ2Q9P299 210 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 ZNF319Q9P2F9 582 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 SCP2D1Q9UJQ7 156 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 IGHV3OR16-10A0A075B7F0 116 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 IGLV3-32A0A0A0MS00 114 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 LOC100289279A0A1B0GTE1 492 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 ZNF724A8MTY0 619 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 H7C2Y5 167 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 SYNGR1O43759 233 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 DIRAS3O95661 229 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 TXNDC12O95881 172 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 IL18BPO95998 194 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 MPV17P39210 176 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 MTNR1BP49286 362 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 NPY4RP50391 375 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 CCR6P51684 374 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 NAAAQ02083 359 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 GRK1Q15835 563 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 CTF1Q16619 201 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 CCDC92Q53HC0 331 aaPredicted RBP4.71□□□□□ -1.66
VPS13C-209ENST00000560637 HIST2H2BCQ6DN03 193 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 RAB12Q6IQ22 244 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 XKRXQ6PP77 449 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 OR52I2Q8NH67 350 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 BARHL1Q9BZE3 327 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 WDR13Q9H1Z4 485 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 PPIL3Q9H2H8 161 aaKnown RBP4.71□□□□□ -1.66
VPS13C-209ENST00000560637 MOB1AQ9H8S9 216 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 FAIMQ9NVQ4 179 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 TAS2R8Q9NYW2 309 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 ABRACLQ9P1F3 81 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 AMDHD2Q9Y303 409 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 RNF115Q9Y4L5 304 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 LOC400499M0QZD8 3231 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 A0A1W2PPE3 182 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 E9PLN8 166 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 H0YL77 283 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 WNT9BO14905 357 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 PLPP2O43688 288 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 GLSO94925 669 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 PLAUP00749 431 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 TNFRSF1AP19438 455 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 NFYAP23511 347 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 CD40P25942 277 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 THBS4P35443 961 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 GDNFP39905 211 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 PTGFRP43088 359 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ATP5J2P56134 94 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 UBE2MP61081 183 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 SLC9A3R2Q15599 337 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 MPPED2Q15777 294 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 GABRA6Q16445 453 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 SLC25A53Q5H9E4 307 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 C9orf152Q5JTZ5 239 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 RIPPLY2Q5TAB7 128 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 DMKNQ6E0U4 476 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ABLIM2Q6H8Q1 611 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 TMEM91Q6ZNR0 172 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 LHFPL2Q6ZUX7 228 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 CATSPERDQ86XM0 798 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 MAPK1IP1LQ8NDC0 245 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 OR56B1Q8NGI3 324 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 OR4D6Q8NGJ1 314 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 OR56B4Q8NH76 319 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 SVIPQ8NHG7 77 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ST7LQ8TDW4 575 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ARHGAP5-AS1Q96IT6 56 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 VKORC1Q9BQB6 163 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 NICN1Q9BSH3 213 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 MRPL13Q9BYD1 178 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 MED28Q9H204 178 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 CLEC4MQ9H2X3 399 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 COMMD9Q9P000 198 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ONECUT1Q9UBC0 465 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 C14orf166Q9Y224 244 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 POLDIP2Q9Y2S7 368 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 RBMX2Q9Y388 322 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 FAM215AQ9Y5M1 114 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ARFGEF3Q5TH69 2177 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ZZEF1O43149 2961 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 RFPL4AA6NLU0 287 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 A8MXE2 369 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 RFPL4AL1F8VTS6 287 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms