RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 PDZK1IP1Q13113 114 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 HNRNPA0Q13151 305 aaKnown RBP8.12□□□□□ -1.11
CUX1-216ENST00000558469 TUSC1Q2TAM9 212 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 LINC01559Q495D7 138 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 HES5Q5TA89 166 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 FOXB2Q5VYV0 432 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 ZNF826PQ6ZT77 177 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 SLC25A26Q70HW3 274 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 TGIF2LYQ8IUE0 185 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 CDH26Q8IXH8 852 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 C11orf53Q8IXP5 236 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 PNLDC1Q8NA58 520 aaKnown RBP8.12□□□□□ -1.11
CUX1-216ENST00000558469 OR51F2Q8NH61 342 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 TNFAIP8L1Q8WVP5 186 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 NEU4Q8WWR8 484 aaPredicted RBP8.12□□□□□ -1.11
CUX1-216ENST00000558469 AQP3Q92482 292 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 FOXRED1Q96CU9 486 aaPredicted RBP8.12□□□□□ -1.11
CUX1-216ENST00000558469 DGCR14Q96DF8 476 aaKnown RBP8.12□□□□□ -1.11
CUX1-216ENST00000558469 UQCC2Q9BRT2 126 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 PKIBQ9C010 78 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 FAM192AQ9GZU8 254 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 TLNRD1Q9H1K6 362 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 DCSTAMPQ9H295 470 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 FN3KRPQ9HA64 309 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 PLGRKTQ9HBL7 147 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 BATF3Q9NR55 127 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 CACNG2Q9Y698 323 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 SPG11Q96JI7 2443 aa8.12□□□□□ -1.11
CUX1-216ENST00000558469 A0A0G2JK05 382 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 IFITM5A6NNB3 132 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 NOTOA8MTQ0 251 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 LYNX1G3V0Z9 82 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 J3QT63 122 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 ZNF701M0R085 212 aaPredicted RBP8.11□□□□□ -1.11
CUX1-216ENST00000558469 SLC17A2O00624 439 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 SYNGR1O43759 233 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 ANGPTL7O43827 346 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 CYB5AP00167 134 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 AVPP01185 164 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 LYNX1P0DP58 116 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 CD37P11049 281 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 DAOP14920 347 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 DNASE1P24855 282 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 COL8A2P25067 703 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 MPZP25189 248 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 HTR2CP28335 458 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 EFNA4P52798 201 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 ZP1P60852 638 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 GMFBP60983 142 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 IL24Q13007 206 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 P2RY14Q15391 338 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 RAB11BQ15907 218 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 C1orf100Q5SVJ3 147 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 IDNKQ5T6J7 187 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 SFXN4Q6P4A7 337 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 WDR82Q6UXN9 313 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 C1QL2Q7Z5L3 287 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 LYPD6Q86Y78 171 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 MKXQ8IYA7 352 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 BATF2Q8N1L9 274 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 OR4D6Q8NGJ1 314 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 OR11L1Q8NGX0 322 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 ZNF671Q8TAW3 534 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 CCL17Q92583 94 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 ERGIC1Q969X5 290 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 SLAMF9Q96A28 289 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 SLC25A46Q96AG3 418 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 LURAP1Q96LR2 239 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 S100A13Q99584 98 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 ELL3Q9HB65 397 aaPredicted RBP8.11□□□□□ -1.11
CUX1-216ENST00000558469 DAPK2Q9UIK4 370 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 ING4Q9UNL4 249 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 MRPS28Q9Y2Q9 187 aaKnown RBP8.11□□□□□ -1.11
CUX1-216ENST00000558469 POLDIP2Q9Y2S7 368 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 ARID1AO14497 2285 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 BAHCC1Q9P281 2608 aa8.11□□□□□ -1.11
CUX1-216ENST00000558469 ITPR2Q14571 2701 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 IGKV1-12A0A0C4DH73 117 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 LRRC30A6NM36 301 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 TRAPPC2LH3BP13 241 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 AIPO00170 330 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 AKR7A2O43488 359 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 SSX4O60224 188 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 CYB5R3P00387 301 aaPredicted RBP8.1□□□□□ -1.11
CUX1-216ENST00000558469 IGKV1D-12P01611 117 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 IGHV4-39P01824 125 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 SLC2A2P11168 524 aaPredicted RBP8.1□□□□□ -1.11
CUX1-216ENST00000558469 IRF2P14316 349 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 BCL3P20749 454 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 PTH2RP49190 550 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 RORCP51449 518 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 ATP5J2P56134 94 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 CLDN12P56749 244 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 HOXA4Q00056 320 aaPredicted RBP8.1□□□□□ -1.11
CUX1-216ENST00000558469 RIN1Q13671 783 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 RSU1Q15404 277 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 CARTPTQ16568 116 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 HFEQ30201 348 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 AWAT2Q6E213 333 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 FAM166AQ6J272 317 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms