RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 DOCK7Q96N67 2140 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 CCDC187A0A096LP49 1063 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 C9JQL5 133 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 FARS2O95363 451 aaKnown RBP11.23□□□□□ -0.61
LDLR-207ENST00000558013 SCGB1D2O95969 90 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 RFPL3SP0C7P2 107 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 SPINK2P20155 84 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 ADH6P28332 368 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 IFI44Q8TCB0 444 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 ZNF629Q9UEG4 869 aaPredicted RBP11.23□□□□□ -0.61
LDLR-207ENST00000558013 PCDHGA1Q9Y5H4 931 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 LOC102725191A0A1B0GVB3 256 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 OTX1P32242 354 aaPredicted RBP11.23□□□□□ -0.61
LDLR-207ENST00000558013 THBS4P35443 961 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 TAS2R46P59540 309 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 FXYD4P59646 89 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 ACTBL2Q562R1 376 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 C10orf128Q5T292 105 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 REEP6Q96HR9 211 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 FOXD3Q9UJU5 478 aaPredicted RBP11.23□□□□□ -0.61
LDLR-207ENST00000558013 PURGQ9UJV8 347 aaKnown RBP11.23□□□□□ -0.61
LDLR-207ENST00000558013 LSM5Q9Y4Y9 91 aaKnown RBP11.23□□□□□ -0.61
LDLR-207ENST00000558013 ZNF407Q9C0G0 2248 aa11.23□□□□□ -0.61
LDLR-207ENST00000558013 A0A0U1RQV5 110 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 MED19A0JLT2 244 aaPredicted RBP11.22□□□□□ -0.61
LDLR-207ENST00000558013 RAB19A4D1S5 217 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 PCP4L1A6NKN8 68 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 HKR1P10072 659 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 MUC1P15941 1255 aaPredicted RBP11.22□□□□□ -0.61
LDLR-207ENST00000558013 CPT2P23786 658 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 SCRN3Q0VDG4 424 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 ZNF239Q16600 458 aaKnown RBP11.22□□□□□ -0.61
LDLR-207ENST00000558013 ETV3LQ6ZN32 361 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 SLC16A14Q7RTX9 510 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 EMG1Q92979 244 aaKnown RBP11.22□□□□□ -0.61
LDLR-207ENST00000558013 SULT4A1Q9BR01 284 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 DUSP23Q9BVJ7 150 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 WNT16Q9UBV4 365 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 LPAR3Q9UBY5 353 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 AK3Q9UIJ7 227 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 NXT1Q9UKK6 140 aaKnown RBP11.22□□□□□ -0.61
LDLR-207ENST00000558013 IGKV1-12A0A0C4DH73 117 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 GEMIN2O14893 280 aaKnown RBP11.22□□□□□ -0.61
LDLR-207ENST00000558013 IGKV1D-12P01611 117 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 MAFAQ8NHW3 353 aaPredicted RBP11.22□□□□□ -0.61
LDLR-207ENST00000558013 ARL11Q969Q4 196 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 Q96M66 194 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 AQP10Q96PS8 301 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 SIT1Q9Y3P8 196 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 IFNA2P01563 188 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 LCATP04180 440 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 OR5H8P0DN80 308 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 PHLDA2Q53GA4 152 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 AKIRIN2Q53H80 203 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 SLC23A3Q6PIS1 610 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 SULF2Q8IWU5 870 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 CCDC36Q8IYA8 594 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 ERGIC1Q969X5 290 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 ANGPTL4Q9BY76 406 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 TAF9BQ9HBM6 251 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 UQCC1Q9NVA1 299 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 HPF1Q9NWY4 346 aa11.22□□□□□ -0.61
LDLR-207ENST00000558013 C14orf166Q9Y224 244 aaKnown RBP11.22□□□□□ -0.61
LDLR-207ENST00000558013 SERPINE3A8MV23 424 aa11.21□□□□□ -0.61
LDLR-207ENST00000558013 SGCEO43556 437 aa11.21□□□□□ -0.61
LDLR-207ENST00000558013 MTRF1O75570 445 aaKnown RBP11.21□□□□□ -0.61
LDLR-207ENST00000558013 MED6O75586 246 aa11.21□□□□□ -0.61
LDLR-207ENST00000558013 DIRAS3O95661 229 aa11.21□□□□□ -0.61
LDLR-207ENST00000558013 PDGFBP01127 241 aaPredicted RBP11.21□□□□□ -0.61
LDLR-207ENST00000558013 ALDH3B1P43353 468 aa11.21□□□□□ -0.61
LDLR-207ENST00000558013 CBX5P45973 191 aa11.21□□□□□ -0.61
LDLR-207ENST00000558013 RPS19BP1Q86WX3 136 aaKnown RBP11.21□□□□□ -0.61
LDLR-207ENST00000558013 MAML2Q8IZL2 1156 aaPredicted RBP11.21□□□□□ -0.61
LDLR-207ENST00000558013 PP6455Q8WZ26 134 aa11.21□□□□□ -0.61
LDLR-207ENST00000558013 TM2D1Q9BX74 207 aa11.21□□□□□ -0.61
LDLR-207ENST00000558013 ZFHX4Q86UP3 3567 aa11.21□□□□□ -0.61
LDLR-207ENST00000558013 ZNF850A8MQ14 1090 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 XRCC2O43543 280 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 LYL1P12980 280 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 RBMXP38159 391 aaKnown RBP11.21□□□□□ -0.62
LDLR-207ENST00000558013 AKR1C3P42330 323 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 SSR4P51571 173 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 SUCLG1P53597 346 aaKnown RBP11.21□□□□□ -0.62
LDLR-207ENST00000558013 DSCR4P56555 118 aaPredicted RBP11.21□□□□□ -0.62
LDLR-207ENST00000558013 HIST1H3AP68431 136 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 NAAAQ02083 359 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 RSU1Q15404 277 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 HIST2H3PS2Q5TEC6 136 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 GGNBP1Q5YKI7 109 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 HAGHLQ6PII5 290 aaPredicted RBP11.21□□□□□ -0.62
LDLR-207ENST00000558013 OPN5Q6U736 354 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 Q6ZPA2 131 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 HIST2H3AQ71DI3 136 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 SVBPQ8N300 66 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 OR11L1Q8NGX0 322 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 CLDN23Q96B33 292 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 RHOFQ9HBH0 211 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 ANXA10Q9UJ72 324 aa11.21□□□□□ -0.62
LDLR-207ENST00000558013 NCKAP5O14513 1909 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 LOC102723996A0A087X1L8 192 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms