RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 PYCARD-AS1I3L0S3 204 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 M0QYG6 137 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 RAD51DO75771 328 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 HTR3BO95264 441 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 KIR2DL2P43627 348 aaPredicted RBP14.53□□□□□ -0.08
LDLR-206ENST00000557958 PRSS12P56730 875 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 PDZK1IP1Q13113 114 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 GFRALQ6UXV0 394 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 ZDHHC23Q8IYP9 409 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 ZSCAN4Q8NAM6 433 aaPredicted RBP14.53□□□□□ -0.08
LDLR-206ENST00000557958 Q96M66 194 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 HIST1H2AAQ96QV6 131 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 OCSTAMPQ9BR26 566 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 TINAGL1Q9GZM7 467 aaPredicted RBP14.53□□□□□ -0.08
LDLR-206ENST00000557958 PTTG3PQ9NZH4 202 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 ZNF69Q9UC07 566 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 KCNK7Q9Y2U2 307 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 STARD10Q9Y365 291 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 ARHGAP21Q5T5U3 1957 aa14.53□□□□□ -0.08
LDLR-206ENST00000557958 WDR1O75083 606 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 CRHP06850 196 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 SULT1A3P0DMM9 295 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 SULT1A4P0DMN0 295 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 ANXA7P20073 488 aaKnown RBP14.52□□□□□ -0.08
LDLR-206ENST00000557958 RAD52P43351 418 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 TMEM50BP56557 158 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 KLRB1Q12918 225 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 ZNF626Q68DY1 528 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 ZNF324BQ6AW86 544 aaPredicted RBP14.52□□□□□ -0.08
LDLR-206ENST00000557958 POM121Q96HA1 1249 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 BOD1Q96IK1 185 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 ALX4Q9H161 411 aaPredicted RBP14.52□□□□□ -0.08
LDLR-206ENST00000557958 CDH20Q9HBT6 801 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 SH3BGRL2Q9UJC5 107 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 ANAPC10Q9UM13 185 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 FREM1Q5H8C1 2179 aa14.52□□□□□ -0.08
LDLR-206ENST00000557958 IGKV1-27A0A075B6S5 117 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 FIGNL2A6NMB9 653 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 ANKRD30BLA7E2S9 258 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 AKR7A2O43488 359 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 SPRY1O43609 319 aaPredicted RBP14.52□□□□□ -0.09
LDLR-206ENST00000557958 SSX5O60225 188 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 NAT1P18440 290 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 COX5AP20674 150 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 PRDX4Q13162 271 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 SCGB2B2Q4G0G5 96 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 OR4S1Q8NGB4 309 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 OR11H7Q8NGC8 314 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 PECRQ9BY49 303 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 PLSCR4Q9NRQ2 329 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 PLEKHJ1Q9NW61 149 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 PROCRQ9UNN8 238 aa14.52□□□□□ -0.09
LDLR-206ENST00000557958 PIEZO2Q9H5I5 2752 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 CHD8Q9HCK8 2581 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 TMEM82A0PJX8 343 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 MBD3L4A6NDZ8 208 aaPredicted RBP14.51□□□□□ -0.09
LDLR-206ENST00000557958 MBD3L3A6NE82 208 aaPredicted RBP14.51□□□□□ -0.09
LDLR-206ENST00000557958 MBD3L5A6NJ08 208 aaPredicted RBP14.51□□□□□ -0.09
LDLR-206ENST00000557958 FOXI3A8MTJ6 420 aaPredicted RBP14.51□□□□□ -0.09
LDLR-206ENST00000557958 LYZL6O75951 148 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 PLATP00750 562 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 GABRA6Q16445 453 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 CEACAM21Q3KPI0 293 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 UNQ6126/PRO20091Q6UXV3 157 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 C17orf78Q8N4C9 275 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 GVQW1Q8N7I0 195 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 OR4K15Q8NH41 348 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 MBD3L2Q8NHZ7 208 aaPredicted RBP14.51□□□□□ -0.09
LDLR-206ENST00000557958 MS4A3Q96HJ5 214 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 HYLS1Q96M11 299 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 RANBP3Q9H6Z4 567 aaPredicted RBP14.51□□□□□ -0.09
LDLR-206ENST00000557958 CACNA1GO43497 2377 aa14.51□□□□□ -0.09
LDLR-206ENST00000557958 CD300LBA8K4G0 201 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 ERVH48-1M5A8F1 160 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 ANGPTL7O43827 346 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 NGFP01138 241 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 HPXP02790 462 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 ZNF14P17017 642 aaPredicted RBP14.5□□□□□ -0.09
LDLR-206ENST00000557958 GABRR1P24046 479 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 HRH1P35367 487 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 TAS2R46P59540 309 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 HLXQ14774 488 aaPredicted RBP14.5□□□□□ -0.09
LDLR-206ENST00000557958 SAXO1Q8IYX7 474 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 OSR2Q8N2R0 312 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 SPICQ8N5J4 248 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 OR51F2Q8NH61 342 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 FAM57AQ8TBR7 257 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 ST8SIA4Q92187 359 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 SLC6A7Q99884 636 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 SEC22CQ9BRL7 303 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 OBP2BQ9NPH6 170 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 GPR160Q9UJ42 338 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 HSF4Q9ULV5 492 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 MPC1Q9Y5U8 109 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 CACNA1AO00555 2505 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 SVILO95425 2214 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 PRRC2CQ9Y520 2896 aaKnown RBP14.5□□□□□ -0.09
LDLR-206ENST00000557958 MEIKINA0A087WXM9 373 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 PQLC2LA1A4F0 135 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 ZNF735P0CB33 412 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms