RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 NELFAQ9H3P2 528 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 METTL7AQ9H8H3 244 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 C19orf12Q9NSK7 152 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 RP1P56715 2156 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 IGHV3-20A0A0C4DH32 117 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 TRBV11-1A0A0K0K1C0 115 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 SHISA7A6NL88 538 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 IGHV2-5P01817 119 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 MBPP02686 304 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-231ENST00000557433 GLAP06280 429 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 SNRNP70P08621 437 aaKnown RBP14.24□□□□□ -0.13
SHMT2-231ENST00000557433 ZNF728P0DKX0 622 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 DUSP1P28562 367 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 OTX1P32242 354 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-231ENST00000557433 PTGDSP41222 190 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 STARD6P59095 220 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 TMEM187Q14656 261 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 ABCA11PQ4W5N1 156 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 WDR74Q6RFH5 385 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-231ENST00000557433 OR2M3Q8NG83 312 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 OR5D18Q8NGL1 313 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 SLC22A8Q8TCC7 542 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 MAFIPQ8WZ33 124 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 SYT3Q9BQG1 590 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 OR51M1Q9H341 326 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 UNKLQ9H9P5 680 aaKnown RBP14.24□□□□□ -0.13
SHMT2-231ENST00000557433 SPACA1Q9HBV2 294 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 KCNJ16Q9NPI9 418 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 MCTS1Q9ULC4 181 aaKnown RBP14.24□□□□□ -0.13
SHMT2-231ENST00000557433 LHX6Q9UPM6 363 aa14.24□□□□□ -0.13
SHMT2-231ENST00000557433 CHD9Q3L8U1 2897 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 SHISA8B8ZZ34 492 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 M0R036 132 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 ZFAND5O76080 213 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 UCP3P55916 312 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 PIGPP57054 158 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 CFHR1Q03591 330 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 DLX2Q07687 328 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-231ENST00000557433 ZNF616Q08AN1 781 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 LGI3Q8N145 548 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 CADM4Q8NFZ8 388 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 ERGIC1Q969X5 290 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 NAA11Q9BSU3 229 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-231ENST00000557433 EIF5A2Q9GZV4 153 aaKnown RBP14.23□□□□□ -0.13
SHMT2-231ENST00000557433 UMAD1C9J7I0 102 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 TOX3O15405 576 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-231ENST00000557433 GLB1P16278 677 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 ACKR3P25106 362 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 CSNK1A1P48729 337 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 LBX1P52954 281 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 NXPH1P58417 271 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 LIAT1Q6ZQX7 453 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 Q6ZS52 159 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 C6orf201Q7Z4U5 140 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 TMEM54Q969K7 222 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 SPTSSAQ969W0 71 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 INTS12Q96CB8 462 aaKnown RBP14.23□□□□□ -0.13
SHMT2-231ENST00000557433 C18orf12Q96KH6 178 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 SMIM3Q9BZL3 60 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 ELL3Q9HB65 397 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-231ENST00000557433 GSN-AS1Q9NRJ2 163 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 PIGLQ9Y2B2 252 aa14.23□□□□□ -0.13
SHMT2-231ENST00000557433 IGKV1D-8A0A087WSZ0 117 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 A0A087WZY1 265 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 BTBD17A6NE02 478 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 AP4M1O00189 453 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 ST8SIA3O43173 380 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 PIAS2O75928 621 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 SCGB1D2O95969 90 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 IFNA17P01571 189 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 TMEM225BP0DP42 221 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 CHATP28329 748 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 ID4P47928 161 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 SRPXP78539 464 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 FABP9Q0Z7S8 132 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 AKIRIN2Q53H80 203 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 LRRC18Q8N456 261 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 FADS6Q8N9I5 356 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 CCDC71LQ8N9Z2 235 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 THAP3Q8WTV1 239 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-231ENST00000557433 RTN4IP1Q8WWV3 396 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-231ENST00000557433 RLN3Q8WXF3 142 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 LIN37Q96GY3 246 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-231ENST00000557433 PIGQQ9BRB3 760 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 TMED3Q9Y3Q3 217 aa14.22□□□□□ -0.13
SHMT2-231ENST00000557433 LAMA2P24043 3122 aaKnown RBP14.22□□□□□ -0.13
SHMT2-231ENST00000557433 NME2P1O60361 137 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 VAMP5O95183 116 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 CYC1P08574 325 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 FAHP16930 419 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 EIF2S3P41091 472 aaKnown RBP14.21□□□□□ -0.13
SHMT2-231ENST00000557433 SULT1A1P50225 295 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 CLINT1Q14677 625 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 CNN3Q15417 329 aaKnown RBP14.21□□□□□ -0.13
SHMT2-231ENST00000557433 SHHQ15465 462 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 RAB30Q15771 203 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 POM121Q96HA1 1249 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 TMPRSS5Q9H3S3 457 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 MYOTQ9UBF9 498 aa14.21□□□□□ -0.13
SHMT2-231ENST00000557433 PCDH15Q96QU1 1955 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms