RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ZNF281Q9Y2X9 895 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 NAV3Q8IVL0 2385 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 DNHD1Q96M86 4753 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 IGKV1-9A0A0C4DH69 117 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 ADAM20O43506 726 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 RGS10O43665 173 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 SYNGR1O43759 233 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 CRLF1O75462 422 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 CD2P06729 351 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 GLRA1P23415 457 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 CRHBPP24387 322 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 MPZP25189 248 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 AZGP1P25311 298 aaKnown RBP11.34□□□□□ -0.59
SHMT2-228ENST00000557302 RBP2P50120 134 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 ATP1B3P54709 279 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 GNB2P62879 340 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 CR1LQ2VPA4 569 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 RBM48Q5RL73 367 aaKnown RBP11.34□□□□□ -0.59
SHMT2-228ENST00000557302 ANGPTL5Q86XS5 388 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 PARP16Q8N5Y8 322 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 ZFP41Q8N8Y5 198 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 POC1AQ8NBT0 407 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 DNAAF1Q8NEP3 725 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 OR5D14Q8NGL3 314 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 OR13C9Q8NGT0 318 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 GHSRQ92847 366 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 SPSB1Q96BD6 273 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 SEH1LQ96EE3 360 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 SSBP3Q9BWW4 388 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-228ENST00000557302 PKIBQ9C010 78 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 SHARPINQ9H0F6 387 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 ZCCHC4Q9H5U6 513 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 NEK6Q9HC98 313 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 CLN8Q9UBY8 286 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 OR5V1Q9UGF6 321 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 CDC42EP3Q9UKI2 254 aa11.34□□□□□ -0.59
SHMT2-228ENST00000557302 IGKV1-27A0A075B6S5 117 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 A0A0G2JMP0 313 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 A0A0X1KG70 313 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 KIAA1324LA8MWY0 1029 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-228ENST00000557302 TNFRSF13BO14836 293 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-228ENST00000557302 PHF1O43189 567 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-228ENST00000557302 DENRO43583 198 aaKnown RBP11.33□□□□□ -0.6
SHMT2-228ENST00000557302 MT-ND2P03891 347 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 PGA5P0DJD9 388 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 HNF1AP20823 631 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 SOX2P48431 317 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 BDH1Q02338 343 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 IL24Q13007 206 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 IRF3Q14653 427 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 CHRFAM7AQ494W8 412 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 YIF1BQ5BJH7 314 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 FAM120AOSQ5T036 256 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 DCAF12L2Q5VW00 463 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 LHFPL2Q6ZUX7 228 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 CALHM1Q8IU99 346 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 SERPINA12Q8IW75 414 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 OR4M2Q8NGB6 313 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 TMIGD2Q96BF3 282 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 OPALINQ96PE5 141 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 BEX2Q9BXY8 128 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 CCDC90BQ9GZT6 254 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 SNTG1Q9NSN8 517 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 RASL12Q9NYN1 266 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 NLKQ9UBE8 527 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 LPAR3Q9UBY5 353 aa11.33□□□□□ -0.6
SHMT2-228ENST00000557302 POLR3KQ9Y2Y1 108 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-228ENST00000557302 PPIAL4CA0A0B4J2A2 164 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 PNMA8CA0A1B0GUJ8 204 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 NKX6-3A6NJ46 265 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 TMPRSS2O15393 492 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 NOS1APO75052 506 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-228ENST00000557302 NXPH2O95156 264 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 PLATP00750 562 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 CELP19835 753 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 GATA3P23771 443 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 EEF1B2P24534 225 aaKnown RBP11.32□□□□□ -0.6
SHMT2-228ENST00000557302 NPY4RP50391 375 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 MTCP1P56278 107 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 ACSM1Q08AH1 577 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 DOC2BQ14184 412 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 SPHARQ15513 63 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 SMIM21Q3B7S5 101 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 WDR25Q64LD2 544 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-228ENST00000557302 STUMQ69YW2 141 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 FAHD2BQ6P2I3 314 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-228ENST00000557302 ZNF841Q6ZN19 808 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 PRSS48Q7RTY5 328 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 SLC36A1Q7Z2H8 476 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 OR5T2Q8NGG2 359 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 TMEM106AQ96A25 262 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 FAHD2AQ96GK7 314 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 PGLYRP3Q96LB9 341 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 ZNF488Q96MN9 340 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 CCL13Q99616 98 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 NRIP2Q9BQI9 281 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 DNTTIP1Q9H147 329 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 RASSF4Q9H2L5 321 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 KAAG1Q9UBP8 84 aa11.32□□□□□ -0.6
SHMT2-228ENST00000557302 CTSZQ9UBR2 303 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms