RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NDNFQ8TB73 568 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 AQP3Q92482 292 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 MYDGFQ969H8 173 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 MAGEL2Q9UJ55 1249 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 POLDIP2Q9Y2S7 368 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 MINOS1-NBL1R4GNA1 71 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 C17orf98A8MV24 154 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 ODF3BA8MYP8 253 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 GSC2O15499 205 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 DNAJC8O75937 253 aaPredicted RBP13.58□□□□□ -0.24
VPS29-204ENST00000548259 LYNP07948 512 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 ZNF728P0DKX0 622 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 CLUP10909 449 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 ATP6V1B1P15313 513 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 ZNF273Q14593 569 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 CEP78Q5JTW2 689 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 ZNF770Q6IQ21 691 aaPredicted RBP13.58□□□□□ -0.24
VPS29-204ENST00000548259 RNF144BQ7Z419 303 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 COMMD2Q86X83 199 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 ZNF573Q86YE8 665 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 ZNF454Q8N9F8 522 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 POC1AQ8NBT0 407 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 THEM6Q8WUY1 208 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 OTULINQ96BN8 352 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 INPP5EQ9NRR6 644 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 HILPDAQ9Y5L2 63 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 U3KQK5 164 aa13.58□□□□□ -0.24
VPS29-204ENST00000548259 C3orf84H3BNL1 204 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 NXPH2O95156 264 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 TK1P04183 234 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 PIPP12273 146 aaPredicted RBP13.57□□□□□ -0.24
VPS29-204ENST00000548259 H2AFXP16104 143 aaPredicted RBP13.57□□□□□ -0.24
VPS29-204ENST00000548259 LMO1P25800 156 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 PSMA6P60900 246 aaKnown RBP13.57□□□□□ -0.24
VPS29-204ENST00000548259 LCN1P1Q5VSP4 162 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 PLCXD3Q63HM9 321 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 Q6ZS46 218 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 ZBTB49Q6ZSB9 765 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 CD177Q8N6Q3 437 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 CMTM5Q96DZ9 223 aa13.57□□□□□ -0.24
VPS29-204ENST00000548259 FGF23Q9GZV9 251 aaPredicted RBP13.57□□□□□ -0.24
VPS29-204ENST00000548259 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.57□□□□□ -0.24
VPS29-204ENST00000548259 TNFRSF11BO00300 401 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 SEMG1P04279 462 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 BRS3P32247 399 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 CBX1P83916 185 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 RIPPLY1Q0D2K3 151 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 ZNF684Q5T5D7 378 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 LINC01590Q5TEZ4 76 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 MOB3CQ70IA8 216 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 GDPD3Q7L5L3 318 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 HDXQ7Z353 690 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 OR9Q2Q8NGE9 314 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 OR8B12Q8NGG6 310 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 OR8D4Q8NGM9 314 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 LYZL4Q96KX0 146 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 NSMCE2Q96MF7 247 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 LIN7BQ9HAP6 207 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 OR14J1Q9UGF5 321 aa13.56□□□□□ -0.24
VPS29-204ENST00000548259 A0A0U1RQV5 110 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 ACOD1A6NK06 481 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 CCNB2O95067 398 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 IGHV1-8P0DP01 117 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 HMGA2P52926 109 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 COL10A1Q03692 680 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 KRT74Q7RTS7 529 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 LINC00482Q8N8I6 264 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 ASCC1Q8N9N2 400 aaKnown RBP13.55□□□□□ -0.24
VPS29-204ENST00000548259 OTOSQ8NHW6 89 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 STMN2Q93045 179 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 AMELYQ99218 206 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 CMC2Q9NRP2 79 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 ENPP5Q9UJA9 477 aa13.55□□□□□ -0.24
VPS29-204ENST00000548259 FAM90A22PA8MWA6 464 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 J3QT63 122 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 NOS1APO75052 506 aaPredicted RBP13.54□□□□□ -0.24
VPS29-204ENST00000548259 ZFPL1O95159 310 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 GASTP01350 101 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 PGA5P0DJD9 388 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 HAAOP46952 286 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 DLX6P56179 175 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 EDDM3BP56851 147 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 ACTA2P62736 377 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 ACTG2P63267 376 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 ACTC1P68032 377 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 ACTA1P68133 377 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 TCTEX1D4Q5JR98 221 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 KRT77Q7Z794 578 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 RNF148Q8N7C7 305 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 AQP11Q8NBQ7 271 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 ZNF714Q96N38 554 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 OR8B4Q96RC9 309 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 BTBD10Q9BSF8 475 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 PCDHGB5Q9Y5G0 923 aa13.54□□□□□ -0.24
VPS29-204ENST00000548259 hADV38S2A0JD32 116 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 K7N7A8 449 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 M0QZK8 103 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 NRASP01111 189 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 LPLP06858 475 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 CHRM2P08172 466 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms