RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 CAVIN4Q5BKX8 364 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 TTC32Q5I0X7 151 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 ASCL4Q6XD76 172 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 LINC00336Q6ZUF6 198 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 DAZ4Q86SG3 579 aaKnown RBP1.49□□□□□ -2.17
CD44-238ENST00000534296 ITPRIPQ8IWB1 547 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 ZNF101Q8IZC7 436 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 FAM58AQ8N1B3 248 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 STK40Q8N2I9 435 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 ASCC1Q8N9N2 400 aaKnown RBP1.49□□□□□ -2.17
CD44-238ENST00000534296 SPANXA2-OT1Q8N9U9 137 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 SLC26A10Q8NG04 563 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 OR52K1Q8NGK4 314 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 OR5H2Q8NGV7 314 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 OR6N2Q8NGY6 317 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 OR52N1Q8NH53 320 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 OR51A7Q8NH64 312 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 BAALCQ8WXS3 180 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 C22orf15Q8WYQ4 148 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 OR2A7Q96R45 310 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 TMED9Q9BVK6 235 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 BEX2Q9BXY8 128 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 ANKHQ9HCJ1 492 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 ABCB9Q9NP78 766 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 DAZ1Q9NQZ3 744 aaKnown RBP1.49□□□□□ -2.17
CD44-238ENST00000534296 DNAJC27Q9NZQ0 273 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 ZMAT5Q9UDW3 170 aaKnown RBP1.49□□□□□ -2.17
CD44-238ENST00000534296 MARCOQ9UEW3 520 aaPredicted RBP1.49□□□□□ -2.17
CD44-238ENST00000534296 PRO0628Q9UI54 55 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 ZNF257Q9Y2Q1 563 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 AP3M1Q9Y2T2 418 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 PPIL1Q9Y3C6 166 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 ADGRL1O94910 1474 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 TNS2Q63HR2 1409 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 LOXHD1Q8IVV2 1947 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 TUBGCP6Q96RT7 1819 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 TRAV8-7A0A075B6U6 113 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 TMEM72A0PK05 275 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 RAB19A4D1S5 217 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 GOLGA8IPA6NC78 632 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 J3QT63 122 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 UPK2O00526 184 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 PRMT5O14744 637 aaPredicted RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 ENSAO43768 121 aaKnown RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 ALOX12BO75342 701 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 TRAPPC6AO75865 159 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 SNAI1O95863 264 aaPredicted RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 LHBP01229 141 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 SCGB1C2P0DMR2 95 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 NTF3P20783 257 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 CCNOP22674 350 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 IL12BP29460 328 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 CFHR2P36980 270 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 GPR4P46093 362 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 TUFMP49411 452 aaKnown RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 CCL23P55773 120 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 RAB25P57735 213 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 RPL31P62899 125 aaKnown RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 IL5RAQ01344 420 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 IFFO1Q0D2I5 559 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 UBE2NLQ5JXB2 153 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 C6orf183Q5T699 404 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 FAM27D1Q5T7N8 215 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 SYT6Q5T7P8 510 aaPredicted RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 APOBEC3HQ6NTF7 200 aaKnown RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 ZNF773Q6PK81 442 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 CLEC19AQ6UXS0 136 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 FAM231DQ6ZW35 169 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 CYP4Z1Q86W10 505 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 DAW1Q8N136 415 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 CCNYL1Q8N7R7 359 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 SLC35G3Q8N808 338 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 C1orf64Q8NEQ6 169 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 OR6K2Q8NGY2 324 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 ZNF420Q8TAQ5 688 aaPredicted RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 LRRC20Q8TCA0 184 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 SCGB1C1Q8TD33 95 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 KLF14Q8TD94 323 aaPredicted RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 TFGQ92734 400 aaPredicted RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 RBPMSQ93062 196 aaKnown RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 CIDECQ96AQ7 238 aaPredicted RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 S100PBPQ96BU1 408 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 SMIM8Q96KF7 97 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 GLT1D1Q96MS3 346 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 METTL26Q96S19 204 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 VAT1Q99536 393 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 GABRG3Q99928 467 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 APOL4Q9BPW4 351 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 UTP23Q9BRU9 249 aaKnown RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 OR2AG1Q9H205 316 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 SLC38A1Q9H2H9 487 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 NLE1Q9NVX2 485 aaPredicted RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 SDHAF2Q9NX18 166 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 TAS2R1Q9NYW7 299 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 VAPAQ9P0L0 249 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 DHCR7Q9UBM7 475 aaKnown RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 KLF12Q9Y4X4 402 aa1.48□□□□□ -2.17
CD44-238ENST00000534296 AHDC1Q5TGY3 1603 aaPredicted RBP1.48□□□□□ -2.17
CD44-238ENST00000534296 IGHV3OR16-8A0A075B7F1 116 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 IGHV6-1A0A0B4J1U7 121 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms