RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 GAPDHP04406 335 aaKnown RBP2.67□□□□□ -1.98
CD44-235ENST00000532339 TPM2P07951 284 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 RHOXF2BP0C7M4 288 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 ETS2P15036 469 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 NPR2P20594 1047 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 ZBTB25P24278 435 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 MAGEA1P43355 309 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 ZNF83P51522 516 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 SUCLG1P53597 346 aaKnown RBP2.67□□□□□ -1.98
CD44-235ENST00000532339 ATP5IP56385 69 aaPredicted RBP2.67□□□□□ -1.98
CD44-235ENST00000532339 CDK16Q00536 496 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 AANATQ16613 207 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 GSG1Q2KHT4 349 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 OR2B11Q5JQS5 317 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 UTF1Q5T230 341 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 PRAMEF5Q5TYX0 476 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 PRAMEF6Q5VXH4 476 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 ZNF470Q6ECI4 717 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 CCDC137Q6PK04 289 aaKnown RBP2.67□□□□□ -1.98
CD44-235ENST00000532339 UNQ9370/PRO34162Q6UXP9 181 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 TFAP2EQ6VUC0 442 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 H2BFWTQ7Z2G1 175 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 VN1R4Q7Z5H5 301 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 UBE2J2Q8N2K1 259 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 C11orf42Q8N5U0 333 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 TMEM35BQ8NCS4 154 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 OR9K2Q8NGE7 335 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 OR52E2Q8NGJ4 325 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 FAM110BQ8TC76 370 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 MAGEE2Q8TD90 523 aaPredicted RBP2.67□□□□□ -1.98
CD44-235ENST00000532339 TCTEX1D2Q8WW35 142 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 MAIP1Q8WWC4 291 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 RAD51AP1Q96B01 352 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 NAP1L5Q96NT1 182 aaPredicted RBP2.67□□□□□ -1.98
CD44-235ENST00000532339 KIR2DL4Q99706 377 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 KLHDC3Q9BQ90 382 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 TMEM165Q9HC07 324 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 MRPS30Q9NP92 439 aaKnown RBP2.67□□□□□ -1.98
CD44-235ENST00000532339 ETNK2Q9NVF9 386 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 RBM22Q9NW64 420 aaKnown RBP eCLIP2.67□□□□□ -1.98
CD44-235ENST00000532339 Q9UF83 564 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 PLLPQ9Y342 182 aa2.67□□□□□ -1.98
CD44-235ENST00000532339 IGLV3-16A0A075B6K0 115 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 ATP6V1G2-DDX39BF2Z307 99 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 RNASEK-C17orf49H0YIS7 233 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 FOXH1O75593 365 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 IGHV2-5P01817 119 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 OR4A8P0C604 315 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 PABPC4LP0CB38 370 aaKnown RBP2.66□□□□□ -1.98
CD44-235ENST00000532339 GGT1P19440 569 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 AGTR1P30556 359 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 HTR1FP30939 366 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 HCAR3P49019 387 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 MEOX2P50222 304 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 BIDP55957 195 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 LCN2P80188 198 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 GBE1Q04446 702 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 SLAMF1Q13291 335 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 GK3PQ14409 553 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 DUSP7Q16829 419 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 KLHL38Q2WGJ6 581 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 OR2G6Q5TZ20 316 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 TTC23LQ6PF05 361 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 ANGPTL8Q6UXH0 198 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 FRA10AC1Q70Z53 315 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 TGIF2LXQ8IUE1 241 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 C1orf174Q8IYL3 243 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 ZCCHC24Q8N2G6 241 aaKnown RBP2.66□□□□□ -1.98
CD44-235ENST00000532339 CADM2Q8N3J6 435 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 ZNF321PQ8N8H1 164 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 ST8SIA1Q92185 356 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 ELMO1Q92556 727 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 RAPGEF5Q92565 580 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 RDH5Q92781 318 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 SLC25A38Q96DW6 304 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 TM4SF19Q96DZ7 209 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 RNF2Q99496 336 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 YTHDF1Q9BYJ9 559 aaKnown RBP2.66□□□□□ -1.98
CD44-235ENST00000532339 OR8D2Q9GZM6 311 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 Q9H3A6 140 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 CA10Q9NS85 328 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 ZNF275Q9NSD4 429 aaPredicted RBP2.66□□□□□ -1.98
CD44-235ENST00000532339 CRCT1Q9UGL9 99 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 USH1CQ9Y6N9 552 aa2.66□□□□□ -1.98
CD44-235ENST00000532339 DOCK11Q5JSL3 2073 aa2.65□□□□□ -1.98
CD44-235ENST00000532339 FAM168BA1KXE4 195 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 CTAGE15A4D2H0 777 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 K7N7A8 449 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 M0R1B8 84 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 DCTN6O00399 190 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 CETN3O15182 167 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 UPK3AO75631 287 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 LYZL6O75951 148 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 SRP72O76094 671 aaKnown RBP2.65□□□□□ -1.99
CD44-235ENST00000532339 IGHV3-23P01764 117 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 FTH1P02794 183 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 HLA-DQB2P05538 268 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 OR8U8P0C7N1 319 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 SLC35G6P0C7Q6 338 aa2.65□□□□□ -1.99
CD44-235ENST00000532339 RNH1P13489 461 aaKnown RBP2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms