RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RRP8O43159 456 aaKnown RBP17.81■□□□□ 0.44
VPS28-209ENST00000528142 WDR1O75083 606 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 CA11O75493 328 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 CXCL3P19876 107 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 TBPP20226 339 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 ARL6IP1Q15041 203 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 CEACAM21Q3KPI0 293 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 SIGIRRQ6IA17 410 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 LIX1LQ8IVB5 337 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 FBXW5Q969U6 566 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 ZNF629Q9UEG4 869 aaPredicted RBP17.81■□□□□ 0.44
VPS28-209ENST00000528142 SCP2D1Q9UJQ7 156 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 PROCRQ9UNN8 238 aa17.81■□□□□ 0.44
VPS28-209ENST00000528142 CHD8Q9HCK8 2581 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 SNRPGP15A8MWD9 76 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 DISC1C4P0D8 188 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 CRHP06850 196 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 CBR1P16152 277 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 PTGER4P35408 488 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 IDH3GP51553 393 aaPredicted RBP17.8■□□□□ 0.44
VPS28-209ENST00000528142 PER3P56645 1201 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 ZNF626Q68DY1 528 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 ZDHHC23Q8IYP9 409 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 ZSCAN4Q8NAM6 433 aaPredicted RBP17.8■□□□□ 0.44
VPS28-209ENST00000528142 OR13C8Q8NGS7 320 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 EXTL1Q92935 676 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 TRAF4Q9BUZ4 470 aaPredicted RBP17.8■□□□□ 0.44
VPS28-209ENST00000528142 ZNF71Q9NQZ8 489 aaPredicted RBP17.8■□□□□ 0.44
VPS28-209ENST00000528142 EIF3KQ9UBQ5 218 aaKnown RBP17.8■□□□□ 0.44
VPS28-209ENST00000528142 ZZEF1O43149 2961 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 MYO7BQ6PIF6 2116 aa17.8■□□□□ 0.44
VPS28-209ENST00000528142 AKR7A2O43488 359 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 SSNA1O43805 119 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 C1QBP02746 253 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 SFTPBP07988 381 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 GABRR1P24046 479 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 HRH1P35367 487 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 CBX5P45973 191 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 ARFRP1Q13795 201 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 NKPD1Q17RQ9 610 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 CD163Q86VB7 1156 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 FTMTQ8N4E7 242 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 OR51F2Q8NH61 342 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 MRPS24Q96EL2 167 aaKnown RBP17.79■□□□□ 0.44
VPS28-209ENST00000528142 ALX4Q9H161 411 aaPredicted RBP17.79■□□□□ 0.44
VPS28-209ENST00000528142 OPN3Q9H1Y3 402 aaPredicted RBP17.79■□□□□ 0.44
VPS28-209ENST00000528142 OR51B6Q9H340 312 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 GPN1Q9HCN4 374 aaPredicted RBP17.79■□□□□ 0.44
VPS28-209ENST00000528142 SMPD2O60906 423 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 RLN1P04808 185 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 MRPL49Q13405 166 aaKnown RBP17.79■□□□□ 0.44
VPS28-209ENST00000528142 TAF9Q16594 264 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 C1orf185Q5T7R7 199 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 FAM180AQ6UWF9 173 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 FBXW12Q6X9E4 464 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 C6orf201Q7Z4U5 140 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 CXorf67Q86X51 503 aaPredicted RBP17.79■□□□□ 0.44
VPS28-209ENST00000528142 ZNF611Q8N823 705 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 Q8NFD4 153 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 PRRT1Q99946 306 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 CHST6Q9GZX3 395 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 HSF4Q9ULV5 492 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 PLEKHA6Q9Y2H5 1048 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 DOCK7Q96N67 2140 aa17.79■□□□□ 0.44
VPS28-209ENST00000528142 MEIKINA0A087WXM9 373 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 MED19A0JLT2 244 aaPredicted RBP17.78■□□□□ 0.44
VPS28-209ENST00000528142 FIGNL2A6NMB9 653 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 LILRA1O75019 489 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 IGKV3-15P01624 115 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 CSN2P05814 226 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 GZMKP49863 264 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 CXADRP78310 365 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 PPA1Q15181 289 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 ZMYND11Q15326 602 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 SLC25A26Q70HW3 274 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 HOGA1Q86XE5 327 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 OSR2Q8N2R0 312 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 RPRMLQ8N4K4 120 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 NAXEQ8NCW5 288 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 OR5A2Q8NGI9 324 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 OR4K15Q8NH41 348 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 CDH20Q9HBT6 801 aa17.78■□□□□ 0.44
VPS28-209ENST00000528142 CREBL2O60519 120 aaPredicted RBP17.77■□□□□ 0.44
VPS28-209ENST00000528142 P2RY6Q15077 328 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 MICBQ29980 383 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 FBXL14Q8N1E6 418 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 C17orf78Q8N4C9 275 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 FAM57AQ8TBR7 257 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 OR5P3Q8WZ94 311 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 MRGPRFQ96AM1 343 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 PCDHB16Q9NRJ7 776 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 PLEKHJ1Q9NW61 149 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 ZNF581Q9P0T4 197 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 ZNF222Q9UK12 451 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 MPC1Q9Y5U8 109 aa17.77■□□□□ 0.44
VPS28-209ENST00000528142 PRRC2CQ9Y520 2896 aaKnown RBP17.77■□□□□ 0.44
VPS28-209ENST00000528142 SMLR1H3BR10 107 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 PMP2P02689 132 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 ANXA3P12429 323 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 IL32P24001 234 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms