RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TMEM210A6NLX4 147 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 C3orf80F5H4A9 247 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 ZNF701M0R085 212 aaPredicted RBP12.91□□□□□ -0.34
LSM1-203ENST00000520755 SLC22A1O15245 554 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 SYNGR1O43759 233 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 RP2O75695 350 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 GRPP07492 148 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 RAB3BP20337 219 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 RPS19P39019 145 aaKnown RBP12.91□□□□□ -0.34
LSM1-203ENST00000520755 PMELP40967 661 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 OR3A4PP47883 348 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 RBP2P50120 134 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 MRPS11P82912 194 aaKnown RBP12.91□□□□□ -0.34
LSM1-203ENST00000520755 HOXA4Q00056 320 aaPredicted RBP12.91□□□□□ -0.34
LSM1-203ENST00000520755 MZT1Q08AG7 82 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 FAM166AQ6J272 317 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 ANGPTL5Q86XS5 388 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 CELF2-AS1Q8N7Q2 184 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 SCCPDHQ8NBX0 429 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 OR4D6Q8NGJ1 314 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 HIST1H2AAQ96QV6 131 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 PIMREGQ9BSJ6 248 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 DCSTAMPQ9H295 470 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 CHODLQ9H9P2 273 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 GCM1Q9NP62 436 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 DLL4Q9NR61 685 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 UFSP2Q9NUQ7 469 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 C14orf119Q9NWQ9 140 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 PPP1R3CQ9UQK1 317 aa12.91□□□□□ -0.34
LSM1-203ENST00000520755 IGKV1-12A0A0C4DH73 117 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 MEGF11A6BM72 1044 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 CCDC160A6NGH7 325 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 A6NLC8 198 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 RHBDL1O75783 438 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 PLATP00750 562 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 IL1AP01583 271 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 IGKV1D-12P01611 117 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 MPZP25189 248 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 CFPP27918 469 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 ZNF93P35789 620 aaPredicted RBP12.9□□□□□ -0.34
LSM1-203ENST00000520755 HAAOP46952 286 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 POU3F4P49335 361 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 ATP1B3P54709 279 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 MTCP1P56278 107 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 C1orf100Q5SVJ3 147 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 HAGHLQ6PII5 290 aaPredicted RBP12.9□□□□□ -0.34
LSM1-203ENST00000520755 ZNF826PQ6ZT77 177 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 USP43Q70EL4 1123 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 C1QL2Q7Z5L3 287 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 TPRA1Q86W33 373 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 JAGN1Q8N5M9 183 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 AQP3Q92482 292 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 C1orf147Q96MC9 270 aaPredicted RBP12.9□□□□□ -0.34
LSM1-203ENST00000520755 BARHL1Q9BZE3 327 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 CNTD2Q9H8S5 307 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 DCAF16Q9NXF7 216 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 V9GY05 133 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 OTOGQ6ZRI0 2925 aa12.9□□□□□ -0.34
LSM1-203ENST00000520755 CLDN25C9JDP6 229 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 RNF223E7ERA6 249 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 J3QT63 122 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 NDUFS8O00217 210 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 SLC17A2O00624 439 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 CDIPTO14735 213 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 PDCD5O14737 125 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 PPIHO43447 177 aaKnown RBP12.89□□□□□ -0.35
LSM1-203ENST00000520755 SPRY1O43609 319 aaPredicted RBP12.89□□□□□ -0.35
LSM1-203ENST00000520755 ANGPTL7O43827 346 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 NOL3O60936 208 aaKnown RBP12.89□□□□□ -0.35
LSM1-203ENST00000520755 OCMP0CE72 109 aaPredicted RBP12.89□□□□□ -0.35
LSM1-203ENST00000520755 SLC2A2P11168 524 aaPredicted RBP12.89□□□□□ -0.35
LSM1-203ENST00000520755 RIN1Q13671 783 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 GLT8D1Q68CQ7 371 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 SFXN4Q6P4A7 337 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 WDR82Q6UXN9 313 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 ZNF573Q86YE8 665 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 CDH26Q8IXH8 852 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 DYNC2LI1Q8TCX1 351 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 SLC25A28Q96A46 364 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 UQCC2Q9BRT2 126 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 PKIBQ9C010 78 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 BPESC1Q9GZL8 116 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 KCNK15Q9H427 330 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 TMEM106BQ9NUM4 274 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 NDUFA13Q9P0J0 144 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 CR1P17927 2039 aa12.89□□□□□ -0.35
LSM1-203ENST00000520755 A0A0B4J203 849 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 IFITM5A6NNB3 132 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 NOTOA8MTQ0 251 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 MAGEB3O15480 346 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 CYB5R3P00387 301 aaPredicted RBP12.88□□□□□ -0.35
LSM1-203ENST00000520755 SLC25A16P16260 332 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 EGR1P18146 543 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 GIFP27352 417 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 GPR6P46095 362 aaPredicted RBP12.88□□□□□ -0.35
LSM1-203ENST00000520755 CLDN12P56749 244 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 TMEM33P57088 247 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 PDZK1IP1Q13113 114 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 AVPI1Q5T686 147 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 HES5Q5TA89 166 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms