RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 AKR7A2O43488 359 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 RPS2P15880 293 aaKnown RBP11.93□□□□□ -0.5
NUP54-216ENST00000514901 EGR1P18146 543 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 GLRA1P23415 457 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 AZGP1P25311 298 aaKnown RBP11.93□□□□□ -0.5
NUP54-216ENST00000514901 CD80P33681 288 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 NPY4RP50391 375 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 MTCP1P56278 107 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 IL24Q13007 206 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 MED22Q15528 200 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 Q499Y3 187 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 ESCO2Q56NI9 601 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 GLCCI1Q86VQ1 547 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 MS4A15Q8N5U1 240 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 ZFP41Q8N8Y5 198 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 TRMT10AQ8TBZ6 339 aaKnown RBP11.93□□□□□ -0.5
NUP54-216ENST00000514901 RGP1Q92546 391 aaPredicted RBP11.93□□□□□ -0.5
NUP54-216ENST00000514901 TMEM186Q96B77 213 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 CPNE2Q96FN4 548 aaPredicted RBP11.93□□□□□ -0.5
NUP54-216ENST00000514901 PGLYRP3Q96LB9 341 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 OPALINQ96PE5 141 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 DNTTIP1Q9H147 329 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 DNAJB11Q9UBS4 358 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 POLR3KQ9Y2Y1 108 aaPredicted RBP11.93□□□□□ -0.5
NUP54-216ENST00000514901 SETD2Q9BYW2 2564 aaPredicted RBP11.93□□□□□ -0.5
NUP54-216ENST00000514901 PPIAL4CA0A0B4J2A2 164 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 TRBV5-5A0A0J9YX44 114 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 MAGEB3O15480 346 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 SULT1B1O43704 296 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 RHBDL1O75783 438 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 CYB5AP00167 134 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 PGA5P0DJD9 388 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 ZNF16P17020 682 aaPredicted RBP11.92□□□□□ -0.5
NUP54-216ENST00000514901 RAB3AP20336 220 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 GATA3P23771 443 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 SOX2P48431 317 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 C11orf91Q3C1V1 193 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 ATPAF1Q5TC12 328 aaPredicted RBP11.92□□□□□ -0.5
NUP54-216ENST00000514901 Q71RC1 249 aaPredicted RBP11.92□□□□□ -0.5
NUP54-216ENST00000514901 SLC36A1Q7Z2H8 476 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 ANGPTL5Q86XS5 388 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 FAM90A1Q86YD7 464 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 MKXQ8IYA7 352 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 POC1AQ8NBT0 407 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 C19orf18Q8NEA5 215 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 OR13C9Q8NGT0 318 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 NPRL2Q8WTW4 380 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 TMEM106AQ96A25 262 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 TMIGD2Q96BF3 282 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 OR5M11Q96RB7 305 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 KAAG1Q9UBP8 84 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 CKLFQ9UBR5 152 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 LRRC42Q9Y546 428 aa11.92□□□□□ -0.5
NUP54-216ENST00000514901 A8MXK9 166 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.91□□□□□ -0.5
NUP54-216ENST00000514901 ADAM20O43506 726 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 GYPAP02724 150 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 MAPK3P27361 379 aaPredicted RBP11.91□□□□□ -0.5
NUP54-216ENST00000514901 PITPNBP48739 271 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 RPS11P62280 158 aaKnown RBP eCLIP11.91□□□□□ -0.5
NUP54-216ENST00000514901 GNB2P62879 340 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 PPP3R1P63098 170 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 MLLT11Q13015 90 aaPredicted RBP11.91□□□□□ -0.5
NUP54-216ENST00000514901 TPBGQ13641 420 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 TBCEQ15813 527 aaPredicted RBP11.91□□□□□ -0.5
NUP54-216ENST00000514901 SMIM21Q3B7S5 101 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 ZNF529Q6P280 563 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 CALHM1Q8IU99 346 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 Q8IYB0 196 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 SVOPQ8N4V2 548 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 UFD1Q92890 307 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 NRIP2Q9BQI9 281 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 SSBP3Q9BWW4 388 aaPredicted RBP11.91□□□□□ -0.5
NUP54-216ENST00000514901 WDR13Q9H1Z4 485 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 HIF1ANQ9NWT6 349 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 NLKQ9UBE8 527 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 CLN8Q9UBY8 286 aa11.91□□□□□ -0.5
NUP54-216ENST00000514901 ANK3Q12955 4377 aaKnown RBP11.9□□□□□ -0.5
NUP54-216ENST00000514901 FN1P02751 2386 aaKnown RBP11.9□□□□□ -0.5
NUP54-216ENST00000514901 IGKV1-27A0A075B6S5 117 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 IGHV3OR15-7A0A075B7D8 119 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 PNMA8CA0A1B0GUJ8 204 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 ZNF879B4DU55 563 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 SYNGR1O43759 233 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 GPX5O75715 221 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 NXPH2O95156 264 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 ALDOBP05062 364 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 HCKP08631 526 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 HSMCR30P0CW71 290 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 PDZK1IP1Q13113 114 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 TRAM1Q15629 374 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 STUMQ69YW2 141 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 LYPD2Q6UXB3 125 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 SLC25A26Q70HW3 274 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 ZNF367Q7RTV3 350 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 ZSCAN4Q8NAM6 433 aaPredicted RBP11.9□□□□□ -0.5
NUP54-216ENST00000514901 MED30Q96HR3 178 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 RHOFQ9HBH0 211 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 LPAR2Q9HBW0 351 aa11.9□□□□□ -0.5
NUP54-216ENST00000514901 TMEM138Q9NPI0 162 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms